Miyakogusa Predicted Gene

Lj2g3v0039360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0039360.1 Non Characterized Hit- tr|I3SGA6|I3SGA6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.86,0,SHS2_Rpb7-N,RNA polymerase Rpb7, N-terminal; S1,Ribosomal
protein S1, RNA-binding domain; no descrip,CUFF.34130.1
         (176 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g096810.1 | DNA-directed RNA polymerase II subunit Rpb7 | ...   352   1e-97
Medtr4g096810.3 | DNA-directed RNA polymerase II subunit Rpb7 | ...   352   1e-97
Medtr4g096810.4 | DNA-directed RNA polymerase II subunit Rpb7 | ...   352   1e-97
Medtr4g096810.2 | DNA-directed RNA polymerase II subunit Rpb7 | ...   352   1e-97
Medtr1g475140.1 | DNA-directed RNA polymerase II subunit Rpb7-li...    79   2e-15
Medtr8g072680.3 | DNA-directed RNA polymerase III protein | HC |...    52   2e-07
Medtr8g072680.1 | DNA-directed RNA polymerase III protein | HC |...    52   2e-07
Medtr8g072680.2 | DNA-directed RNA polymerase III protein | HC |...    52   3e-07

>Medtr4g096810.1 | DNA-directed RNA polymerase II subunit Rpb7 | HC
           | chr4:38520748-38524543 | 20130731
          Length = 176

 Score =  352 bits (903), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 169/176 (96%), Positives = 174/176 (98%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIEN+GKG+IR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGIIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI 176
           +GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP  +
Sbjct: 121 TGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>Medtr4g096810.3 | DNA-directed RNA polymerase II subunit Rpb7 | HC
           | chr4:38520719-38524543 | 20130731
          Length = 176

 Score =  352 bits (903), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 169/176 (96%), Positives = 174/176 (98%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIEN+GKG+IR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGIIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI 176
           +GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP  +
Sbjct: 121 TGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>Medtr4g096810.4 | DNA-directed RNA polymerase II subunit Rpb7 | HC
           | chr4:38520719-38524543 | 20130731
          Length = 176

 Score =  352 bits (903), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 169/176 (96%), Positives = 174/176 (98%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIEN+GKG+IR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGIIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI 176
           +GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP  +
Sbjct: 121 TGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>Medtr4g096810.2 | DNA-directed RNA polymerase II subunit Rpb7 | HC
           | chr4:38520719-38524543 | 20130731
          Length = 176

 Score =  352 bits (903), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 169/176 (96%), Positives = 174/176 (98%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MFFHIVLERNMQLHPRYFGRNLRDNLV+KLMKDVEGTCSGRHGFVVAVTGIEN+GKG+IR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGIIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVAI 176
           +GDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP  +
Sbjct: 121 TGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV 176


>Medtr1g475140.1 | DNA-directed RNA polymerase II subunit Rpb7-like
           protein | HC | chr1:33201883-33201326 | 20130731
          Length = 185

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 6/156 (3%)

Query: 22  LRDNLVAKLMKDVEGTCSGRH-GFVVAVTGIENVGKGLIRDGTGFVTFPVKYQCVVFRPF 80
           L+  ++ +L+ D     + +  G+ +AVT ++ +G+G +R  TG V FPV +  V F+ F
Sbjct: 30  LQRAILIRLLSDFAAKKATKDMGYFLAVTTLDKIGEGKVRQHTGDVLFPVVFNAVTFKIF 89

Query: 81  KGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKD 139
           KGE+LE VV  V K G F   GP++  ++S+  +P  + +  G+ P Y  +    KI KD
Sbjct: 90  KGEVLEGVVHKVLKHGVFMRIGPIENAYLSSSKMPGYV-YVLGENP-YFMNQKMPKIAKD 147

Query: 140 SEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVINDP 173
            +VR+ +IGT+ ++A   F  +  ++ D+LG I+ P
Sbjct: 148 VKVRVVVIGTKWMEAEREFQALVGLEGDYLGPISSP 183


>Medtr8g072680.3 | DNA-directed RNA polymerase III protein | HC |
           chr8:30735986-30740276 | 20130731
          Length = 192

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 16/159 (10%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MF+   +E    L P    R +R+ + ++L +        + G  ++V  I ++  G I 
Sbjct: 1   MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIF 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
            G G  T+ V +  ++FRPF GEI+ A V  ++       +GFF +     I++  H +P
Sbjct: 61  PGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFED-----IYIPTHHMP 115

Query: 115 DDMEFQSGD-----MPNYTTSDGSVKIQKDSEVRLKIIG 148
               + S +        Y        I+  +E+R +++ 
Sbjct: 116 YPSYYISKNNTRKWTWEYGEETDEFNIEISNEIRFQVLS 154


>Medtr8g072680.1 | DNA-directed RNA polymerase III protein | HC |
           chr8:30735666-30740276 | 20130731
          Length = 192

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 16/159 (10%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MF+   +E    L P    R +R+ + ++L +        + G  ++V  I ++  G I 
Sbjct: 1   MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIF 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
            G G  T+ V +  ++FRPF GEI+ A V  ++       +GFF +     I++  H +P
Sbjct: 61  PGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFED-----IYIPTHHMP 115

Query: 115 DDMEFQSGD-----MPNYTTSDGSVKIQKDSEVRLKIIG 148
               + S +        Y        I+  +E+R +++ 
Sbjct: 116 YPSYYISKNNTRKWTWEYGEETDEFNIEISNEIRFQVLS 154


>Medtr8g072680.2 | DNA-directed RNA polymerase III protein | HC |
           chr8:30735776-30740237 | 20130731
          Length = 160

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 11/120 (9%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIENVGKGLIR 60
           MF+   +E    L P    R +R+ + ++L +        + G  ++V  I ++  G I 
Sbjct: 1   MFYLSKIEHKFALPPHLLARPIREAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIF 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVN------KMGFFAEAGPVQIFVSNHLIP 114
            G G  T+ V +  ++FRPF GEI+ A V  ++       +GFF +     I++  H +P
Sbjct: 61  PGAGAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFED-----IYIPTHHMP 115