Miyakogusa Predicted Gene

Lj2g3v0026940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0026940.1 tr|A9SIB2|A9SIB2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_165021,67.21,1e-17,SAM/Pointed domain,Sterile alpha
motif/pointed domain; no description,Sterile alpha motif/pointed
do,CUFF.34085.1
         (263 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g093380.1 | protein translocase, putative | HC | chr3:4266...   350   1e-96

>Medtr3g093380.1 | protein translocase, putative | HC |
           chr3:42666847-42671021 | 20130731
          Length = 263

 Score =  350 bits (897), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 177/263 (67%), Positives = 199/263 (75%)

Query: 1   MEPGKQGVMVAKILPQQLLNPIEQLQTRFKEVESGFKLWLSKQSIXXXXXXXXXXXXXXX 60
           ME GKQG MV K LPQQL NPI+Q+QTR+K +E+GFKLWLSKQSI               
Sbjct: 1   MEQGKQGAMVLKGLPQQLQNPIDQIQTRYKHLENGFKLWLSKQSIAVEAAVVTTTGAAQG 60

Query: 61  XXIGAFMGTLTGDASSPFPTPPPNASLNPQAMASLNQAQALAGGPLVQARNFAVMTGVNA 120
             IGAF+GTLTGDASS FPTPPPNASLNPQAMASL QAQALAGGPL+QARNFA++TGV+A
Sbjct: 61  AAIGAFLGTLTGDASSAFPTPPPNASLNPQAMASLQQAQALAGGPLIQARNFAILTGVSA 120

Query: 121 GITSVLKRIRGKEDVQXXXXXXXXXXXXXXLVSGVGGPNQAANAVTSGLFFALVQGGLFQ 180
           GIT VL+R+RGKEDV+              LVSG+GGPN+  NAVTSGLFFAL QGG+FQ
Sbjct: 121 GITCVLRRLRGKEDVKSSMAAAFGSGVTFSLVSGMGGPNKVGNAVTSGLFFALFQGGVFQ 180

Query: 181 LGQKFSQPPVEDTNYVKTRHMLHNLGLQNYEKHFKKGXXXXXXXXXXXXSALRDVKIPPG 240
           +GQKFS+PP ED +Y KTR+ML NLGLQNYEK+FKKG            SALRDVKIPPG
Sbjct: 181 IGQKFSRPPAEDADYAKTRNMLQNLGLQNYEKNFKKGLLSDNTLPLLNDSALRDVKIPPG 240

Query: 241 PRLLILDHIQRDPDAKEKRGGRS 263
           PRLLILDHI RD D +EKRG R 
Sbjct: 241 PRLLILDHIHRDQDLREKRGSRC 263