Miyakogusa Predicted Gene

Lj1g3v5060970.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5060970.1 tr|E3M1D6|E3M1D6_CAERE CRE-RSR-2 protein
OS=Caenorhabditis remanei GN=Cre-rsr-2 PE=4 SV=1,37.41,3e-18,seg,NULL;
coiled-coil,NULL; cwf21,mRNA splicing factor, Cwf21,CUFF.33985.1
         (820 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g010090.1 | hypothetical protein | HC | chr1:1736812-17340...   408   e-113
Medtr1g010100.1 | pre-mRNA-splicing factor cwc-21, putative | HC...   166   6e-41

>Medtr1g010090.1 | hypothetical protein | HC | chr1:1736812-1734036
           | 20130731
          Length = 777

 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 325/743 (43%), Positives = 402/743 (54%), Gaps = 77/743 (10%)

Query: 134 METLKAALGIVSA--EVQEDGIDDGPGNDGKVGANAEGKHNLKSEHSFLDRDFSLKKQIV 191
           METLKAALGI+S   E+  DG D+G GN+GK  + A+ KH LK EHSFLDRDFS KKQ+ 
Sbjct: 1   METLKAALGIISEADELNTDGNDEGAGNEGKDVSFADAKHILKPEHSFLDRDFSRKKQLE 60

Query: 192 EVQKDENA-KKGLKDSRHHKKGEARKRKYEXXXXXXXXXXXNEKGPRRKHDRENTXXXXX 250
           EVQK+E   KK +KD++ HKKG   KRKY+           +EK  RRK+ R +T     
Sbjct: 61  EVQKEETTKKKSVKDTKRHKKGGTPKRKYKDDSSDSDSSTDDEKTGRRKNSRVSTDSSDE 120

Query: 251 XXXXXXAXXXXXXXXXXXXXXXXXXXXVEXXXXXXXXXXXXXRNAARRTNK---KSGKRH 307
                 A                    V+               +AR++NK   K+ KRH
Sbjct: 121 SDSDSDAKRKVKAKKKQSTSKHRKKSRVDDSDDTDFSSDSEDSKSARKSNKKPVKASKRH 180

Query: 308 ----VSDYHEGSPMHRPKEGKQHKQTSKRRXXXXXXXXXXXXXXXGRLEKQKMKGRVSND 363
                SD+HEG P  R  E K+H +TSKR                GRLEKQK +   S D
Sbjct: 181 DSDGDSDHHEGVPRRRTSEVKRHAKTSKRHDSEEESDADSEKEKHGRLEKQKTRRYGSID 240

Query: 364 EDSDRDGVRRVSGQDRYVQKVXXXXXXXXXXXXXXXXXXXXXXYGRARKSGTVAKKGGPR 423
           EDS R  VR  SGQD++V++                       YGR +K G+VAK+G P+
Sbjct: 241 EDSGRGSVRNASGQDKHVKRRTYYSSDESSSDSETGSSDSDHRYGRTKKVGSVAKRGEPK 300

Query: 424 EEVKGRGDVVEKGKSHAKVDGLDSLRKSYGREFTDGSNTRSRAMAQANKKINEDRDTEPD 483
           EE+  RG+   KGK+ AKVDGLDSLRKSYGR++ +G ++RS+ MA+  KKI+EDRD + +
Sbjct: 301 EEINDRGNAAGKGKNSAKVDGLDSLRKSYGRDYKEGPDSRSQTMAKGEKKIDEDRDRDRE 360

Query: 484 T--FAKQDGHDRKLGKTESESKSRMYQNKSRERDGYSKSAKLGGFDYESSEQRGRNYNRD 541
           T  FAK DG DRK GKTESESKSR+YQN++ ERDGYSKSA++ G D E+S+QRGRNYNRD
Sbjct: 361 TVNFAKHDGQDRKFGKTESESKSRIYQNENEERDGYSKSARIRGNDNETSDQRGRNYNRD 420

Query: 542 G------------EDREARRHGRNDNDLREQEQEHR------------------------ 565
                        ED E RR GRNDND +  +  H                         
Sbjct: 421 VESQSVGRIDRNREDYETRRKGRNDNDYKRDQDNHEEKKHGRNEDDSRDGKHKRDEEDRR 480

Query: 566 -----KDKDDHGERKRGGNEDH-TGRKHLRGEIDHGERKHSRDVDDSREGKLKKEEDGLG 619
                +D+D  GER+ G +ED+ TGRKHLR E DHGERK  R  D+  E K  ++ D  G
Sbjct: 481 EKKSLRDEDVRGERRHGKDEDYPTGRKHLRDEDDHGERKIRRIEDEHAERKSLRDGDDYG 540

Query: 620 ERKRGRDEADPREGKLKRDEDGLGERKRGRDEDDPREGKLKRDEDGHGERKHGRDEDDHV 679
           ERK  RD+   RE K   D D  GE++  RD DD  E K  RD +G GE++  RD DD+ 
Sbjct: 541 ERKNLRDDVGSRERKNSLDGDVRGEKRSSRDGDDYGERKNLRDGNGRGEKRSSRDGDDYG 600

Query: 680 GRKQSR-----------YADDPREGKLRRDEDGHGERKHGRDEDDHVGRKHFRDEDDHGE 728
            RK  R              D R  K  RD D   E K  R EDD  GRK  RDEDD GE
Sbjct: 601 ERKNLRDEGGRGERKNSQDGDGRREKSSRDGDDLRETKTRRIEDDRTGRKTLRDEDDFGE 660

Query: 729 RKHERDEGDNR------------EVKYRRYEDGLGERKNSRDEDGHGERKKLKDGDGHWE 776
           RKH RDEG +R            E+K  RYED   ERKNSR+ED    R+  ++ D H E
Sbjct: 661 RKHSRDEGRHREAQNKRDGDGSVEIKNSRYEDDRKERKNSREEDDRKVRRNSREDDDHRE 720

Query: 777 RQRRRDDDYHAERKPRRDGDYHG 799
           R+  RD+D   ERK R D DYHG
Sbjct: 721 RKSSRDEDVRGERKYRGDDDYHG 743



 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 107/225 (47%), Gaps = 60/225 (26%)

Query: 540 RDGEDREARRHGRNDNDLREQ----------EQEHRKDKDDHGERK--RGGN-------- 579
           RDG+D   R++ R+D   RE+          E+   +D DD+GERK  R GN        
Sbjct: 534 RDGDDYGERKNLRDDVGSRERKNSLDGDVRGEKRSSRDGDDYGERKNLRDGNGRGEKRSS 593

Query: 580 ---EDHTGRKHLRGEIDHGERKHS-----------RDVDDSREGKLKK------------ 613
              +D+  RK+LR E   GERK+S           RD DD RE K ++            
Sbjct: 594 RDGDDYGERKNLRDEGGRGERKNSQDGDGRREKSSRDGDDLRETKTRRIEDDRTGRKTLR 653

Query: 614 EEDGLGERKRGRDEADPREGKLKRDEDGLGERKRGRDEDDPREGKLKRDEDGHGERKHGR 673
           +ED  GERK  RDE   RE + KRD DG  E K  R EDD +E K  R+ED    R++ R
Sbjct: 654 DEDDFGERKHSRDEGRHREAQNKRDGDGSVEIKNSRYEDDRKERKNSREEDDRKVRRNSR 713

Query: 674 DEDDHVGRKQSRYADDPREGKLRRDED--------------GHGE 704
           ++DDH  RK SR  D   E K R D+D              GHGE
Sbjct: 714 EDDDHRERKSSRDEDVRGERKYRGDDDYHGERKRSRRDDDDGHGE 758


>Medtr1g010100.1 | pre-mRNA-splicing factor cwc-21, putative | HC
          | chr1:1739165-1738827 | 20130731
          Length = 112

 Score =  166 bits (421), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 74/87 (85%), Positives = 83/87 (95%)

Query: 1  MYNGIGLQTPRGSGTNGYIQSNKFFVRPKTTKVSDNTKGFEADQGTAGVTRKPNKEILDH 60
          MYNGIGLQTPRGSGTNGYIQSNKFFV+P+T+KV++N KGFE DQGTAGV+RK NKEIL+H
Sbjct: 1  MYNGIGLQTPRGSGTNGYIQSNKFFVKPRTSKVAENMKGFEGDQGTAGVSRKANKEILEH 60

Query: 61 DRKRQIQLKLVILEDKLTDQGYTDSEI 87
          DRKRQIQLKLVILEDKL DQGYT++EI
Sbjct: 61 DRKRQIQLKLVILEDKLIDQGYTEAEI 87