Miyakogusa Predicted Gene

Lj1g3v5060560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5060560.1 Non Characterized Hit- tr|E0CVC0|E0CVC0_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,64.86,4e-19,60S
ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER,NULL; Ribosomal_60s,Ribosomal
protein 60S; seg,NULL,CUFF.34230.1
         (110 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g118060.2 | 60S acidic ribosomal protein | HC | chr7:49000...    96   7e-21
Medtr7g118060.1 | 60S acidic ribosomal protein | HC | chr7:49000...    96   7e-21
Medtr8g024350.1 | 60S acidic ribosomal protein | HC | chr8:89413...    93   6e-20
Medtr3g092600.1 | 60S acidic ribosomal protein | HC | chr3:42321...    83   7e-17
Medtr2g066750.1 | 60S acidic ribosomal protein | HC | chr2:27899...    83   7e-17

>Medtr7g118060.2 | 60S acidic ribosomal protein | HC |
          chr7:49000718-48999778 | 20130731
          Length = 113

 Score = 95.9 bits (237), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query: 1  MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          MSLGETACSYALLILEDD I ATADNI++LLK+A V VES+W  LFAKLAEKKN++DLI
Sbjct: 1  MSLGETACSYALLILEDDNIPATADNITSLLKSAKVDVESFWPALFAKLAEKKNIRDLI 59


>Medtr7g118060.1 | 60S acidic ribosomal protein | HC |
          chr7:49000638-48999939 | 20130731
          Length = 113

 Score = 95.9 bits (237), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query: 1  MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLI 59
          MSLGETACSYALLILEDD I ATADNI++LLK+A V VES+W  LFAKLAEKKN++DLI
Sbjct: 1  MSLGETACSYALLILEDDNIPATADNITSLLKSAKVDVESFWPALFAKLAEKKNIRDLI 59


>Medtr8g024350.1 | 60S acidic ribosomal protein | HC |
           chr8:8941377-8939969 | 20130731
          Length = 108

 Score = 92.8 bits (229), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 59/110 (53%), Gaps = 2/110 (1%)

Query: 1   MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLIX 60
           MS+GE ACSY+L+IL DD IA T + ISTLLK ANV VE+YW  LFAKLAEKKNL DLI 
Sbjct: 1   MSIGEVACSYSLMILHDDNIAVTGEKISTLLKAANVNVEAYWPSLFAKLAEKKNLDDLI- 59

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 110
                                                  SDDDMGFSLFD
Sbjct: 60  -LNAAGGGAPVSVSAPVVAAASTAVAAPTEEKKEEPKDESDDDMGFSLFD 108


>Medtr3g092600.1 | 60S acidic ribosomal protein | HC |
           chr3:42321505-42319755 | 20130731
          Length = 110

 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 53/110 (48%)

Query: 1   MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLIX 60
           MS GE  C YA LIL DD I  TA+ I TLLK ANV VESYW  LFAKLA+ KN+ DL+ 
Sbjct: 1   MSSGELGCIYATLILHDDGIPITAEKIGTLLKAANVTVESYWPSLFAKLAQSKNVDDLVL 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 110
                                                  SDDDMGFSLFD
Sbjct: 61  NSGAVGGAAVAVSAPAAGGGTAAAAEPAAVEKKEEAKEESDDDMGFSLFD 110


>Medtr2g066750.1 | 60S acidic ribosomal protein | HC |
           chr2:27899753-27900085 | 20130731
          Length = 110

 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 53/110 (48%)

Query: 1   MSLGETACSYALLILEDDKIAATADNISTLLKTANVKVESYWAPLFAKLAEKKNLQDLIX 60
           MS GE  C YA LIL DD I  TA+ I TLLK ANV VESYW  LFAKLA+ KN+ DL+ 
Sbjct: 1   MSSGELGCIYATLILHDDGIPITAEKIGTLLKAANVTVESYWPSLFAKLAQSKNVDDLVL 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 110
                                                  SDDDMGFSLFD
Sbjct: 61  NSGAVGGAAVAVSAPTAGGGATAAAEPAAVEKKEEAKEESDDDMGFSLFD 110