Miyakogusa Predicted Gene

Lj1g3v5038250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5038250.1 tr|A9SYE0|A9SYE0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_137470,33.33,0.000000000000001,N-terminal domain of the
delta subunit of the F1F0-ATP synthase,F1F0 ATP synthase OSCP/delta
subunit,CUFF.33920.1
         (240 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g117900.1 | ATP synthase delta chain | HC | chr7:48928332-...   191   5e-49
Medtr4g103330.1 | F0F1-type ATP synthase, delta subunit | HC | c...    73   2e-13

>Medtr7g117900.1 | ATP synthase delta chain | HC |
           chr7:48928332-48926586 | 20130731
          Length = 225

 Score =  191 bits (485), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 99/157 (63%), Positives = 122/157 (77%), Gaps = 12/157 (7%)

Query: 88  FHRNPATGYAAAVIDVAQSTNSLHSVQRDVQRLLTLLQTVNFES--FVADPSRIEEVRRQ 145
           FH  PATGYAAA+IDVAQ TN+LHSVQRDVQRLL  LQ + F+S     DPS +      
Sbjct: 77  FHHKPATGYAAAIIDVAQKTNTLHSVQRDVQRLLKFLQKLKFQSDDVGVDPSLV------ 130

Query: 146 ALKRVLEKGNFHRHVVTILKMLLKKNKLGIVQQVLQEFERIYDELCGTQVVLVSSEKKMG 205
             ++V+E+  F  HVV ++KML+KKNKLGIV++VL+EF RIYDELCGTQVVLVSS++++G
Sbjct: 131 --RKVVEQRKFEGHVVALVKMLMKKNKLGIVEEVLEEFMRIYDELCGTQVVLVSSKREIG 188

Query: 206 EDELLGIVKSVQQMSGAVRVKVKNLVPESL--ASFAV 240
           EDE+ GI KSVQ++SGAVRV VKNLV E    +SFAV
Sbjct: 189 EDEMFGIAKSVQKLSGAVRVNVKNLVQEESFPSSFAV 225


>Medtr4g103330.1 | F0F1-type ATP synthase, delta subunit | HC |
           chr4:42690810-42691990 | 20130731
          Length = 249

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 76/140 (54%), Gaps = 1/140 (0%)

Query: 102 DVAQSTNSLHSVQRDVQRLLTLLQTVNFESFVADPSRIEEVRRQALKRVLEKGNFHRHVV 161
           D+A+S N+L +   D+ ++  L        + + P+  +  +R  +       +F  H  
Sbjct: 76  DLAKSNNTLDATTADIDKIEELFTDPKVFDYFSSPTVEDSTKRNLIAEFATSSSFQPHTQ 135

Query: 162 TILKMLLKKNKLGIVQQVLQEFERIYDELCGTQVVLVSSEKKMGEDELLGIVKSVQQMSG 221
             L +L++ N++ I+ ++++EFE  Y+ L  T++V+V+S  K+    L  I K VQ+++G
Sbjct: 136 NFLNLLIEANRIDIILEIVKEFELHYNTLTDTELVVVTSVVKLESQHLAQIAKQVQKLTG 195

Query: 222 AVRVKVK-NLVPESLASFAV 240
           A  V++K NL P  +A F V
Sbjct: 196 AKNVRIKTNLDPSLVAGFTV 215