Miyakogusa Predicted Gene

Lj1g3v5038210.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5038210.2 tr|H3G9I1|H3G9I1_PHYRM DNA-directed RNA
polymerase subunit OS=Phytophthora ramorum
GN=fgenesh1_pm.C_,46.85,8e-19,RNA polymerase subunit,DNA-directed RNA
polymerase, M/15kDa subunit; C2C2 Zinc finger,Zinc finger,
T,CUFF.33918.2
         (111 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g030180.2 | DNA-directed RNA polymerase subunit | HC | chr...   147   2e-36
Medtr5g030180.4 | DNA-directed RNA polymerase subunit | HC | chr...   147   2e-36
Medtr5g030180.1 | DNA-directed RNA polymerase subunit | HC | chr...   147   2e-36
Medtr5g030180.3 | DNA-directed RNA polymerase subunit | HC | chr...   147   2e-36
Medtr7g116750.1 | DNA-directed RNA polymerase subunit | LC | chr...   142   8e-35

>Medtr5g030180.2 | DNA-directed RNA polymerase subunit | HC |
           chr5:12700149-12698230 | 20130731
          Length = 128

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/115 (61%), Positives = 86/115 (74%), Gaps = 5/115 (4%)

Query: 1   MEFCPSCSNMLKFELPNMGHN----SRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVI 56
           MEFCP C +ML  ELPN  H+    +R +C TCPY+C IEKGVKIKR+Q LVRK IDP+I
Sbjct: 14  MEFCPMCGSMLMLELPNSSHDKFHPTRFYCLTCPYICRIEKGVKIKRRQMLVRKGIDPII 73

Query: 57  SYDDM-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 110
           S+ ++ KN P  +V CPNC H +A+Y   Q RSADEPATIFY CLNEKC H+W+E
Sbjct: 74  SHHEINKNKPKADVPCPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKWKE 128


>Medtr5g030180.4 | DNA-directed RNA polymerase subunit | HC |
           chr5:12699961-12698230 | 20130731
          Length = 115

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/115 (61%), Positives = 86/115 (74%), Gaps = 5/115 (4%)

Query: 1   MEFCPSCSNMLKFELPNMGHN----SRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVI 56
           MEFCP C +ML  ELPN  H+    +R +C TCPY+C IEKGVKIKR+Q LVRK IDP+I
Sbjct: 1   MEFCPMCGSMLMLELPNSSHDKFHPTRFYCLTCPYICRIEKGVKIKRRQMLVRKGIDPII 60

Query: 57  SYDDM-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 110
           S+ ++ KN P  +V CPNC H +A+Y   Q RSADEPATIFY CLNEKC H+W+E
Sbjct: 61  SHHEINKNKPKADVPCPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKWKE 115


>Medtr5g030180.1 | DNA-directed RNA polymerase subunit | HC |
           chr5:12699961-12698230 | 20130731
          Length = 115

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/115 (61%), Positives = 86/115 (74%), Gaps = 5/115 (4%)

Query: 1   MEFCPSCSNMLKFELPNMGHN----SRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVI 56
           MEFCP C +ML  ELPN  H+    +R +C TCPY+C IEKGVKIKR+Q LVRK IDP+I
Sbjct: 1   MEFCPMCGSMLMLELPNSSHDKFHPTRFYCLTCPYICRIEKGVKIKRRQMLVRKGIDPII 60

Query: 57  SYDDM-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 110
           S+ ++ KN P  +V CPNC H +A+Y   Q RSADEPATIFY CLNEKC H+W+E
Sbjct: 61  SHHEINKNKPKADVPCPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKWKE 115


>Medtr5g030180.3 | DNA-directed RNA polymerase subunit | HC |
           chr5:12699961-12698230 | 20130731
          Length = 115

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/115 (61%), Positives = 86/115 (74%), Gaps = 5/115 (4%)

Query: 1   MEFCPSCSNMLKFELPNMGHN----SRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPVI 56
           MEFCP C +ML  ELPN  H+    +R +C TCPY+C IEKGVKIKR+Q LVRK IDP+I
Sbjct: 1   MEFCPMCGSMLMLELPNSSHDKFHPTRFYCLTCPYICRIEKGVKIKRRQMLVRKGIDPII 60

Query: 57  SYDDM-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRE 110
           S+ ++ KN P  +V CPNC H +A+Y   Q RSADEPATIFY CLNEKC H+W+E
Sbjct: 61  SHHEINKNKPKADVPCPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKWKE 115


>Medtr7g116750.1 | DNA-directed RNA polymerase subunit | LC |
           chr7:48211120-48208907 | 20130731
          Length = 117

 Score =  142 bits (358), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 84/117 (71%), Gaps = 6/117 (5%)

Query: 1   MEFCPSCSNMLKFELPN-----MGHNSRLFCQTCPYVCYIEKGVKIKRKQRLVRKEIDPV 55
           MEFCP C +ML  ELPN       H +R +C TCPY+C I K VKIKR+Q LVRK IDP+
Sbjct: 1   MEFCPMCGSMLMLELPNATSHGTSHPTRFYCLTCPYICPIRKEVKIKRRQMLVRKGIDPI 60

Query: 56  ISYDDM-KNAPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 111
           IS+D++ KN P  ++ CPNC H +A+Y   Q RSADEPATIFY C+N+KC HQW+E 
Sbjct: 61  ISHDEINKNKPKADIPCPNCRHPQASYHMEQTRSADEPATIFYKCMNQKCEHQWKEG 117