Miyakogusa Predicted Gene
- Lj1g3v5036100.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v5036100.1 tr|B4FKL9|B4FKL9_MAIZE Fiber protein Fb11 OS=Zea
mays PE=4 SV=1,76.19,2e-19, ,CUFF.33915.1
(63 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g117700.1 | fiber protein Fb11 | HC | chr7:48865536-488638... 107 2e-24
>Medtr7g117700.1 | fiber protein Fb11 | HC |
chr7:48865536-48863843 | 20130731
Length = 63
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/63 (80%), Positives = 57/63 (90%)
Query: 1 MAVMENLKMFVVQQPVVAASCLIAGFGLFLPAFVRPMLDSYQGTKPAPQPALNDVVAGMT 60
MAVME L+MFV Q+PVVAASCLIAGFGLFLPAFVRPMLD+Y+ + PQPAL+DVVAGMT
Sbjct: 1 MAVMERLRMFVAQEPVVAASCLIAGFGLFLPAFVRPMLDTYRAAEQPPQPALSDVVAGMT 60
Query: 61 GKK 63
GKK
Sbjct: 61 GKK 63