Miyakogusa Predicted Gene
- Lj1g3v5034990.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v5034990.1 Non Characterized Hit- tr|I1NHW4|I1NHW4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.2903 PE=,75,8e-18,GroEL
apical domain-like,NULL; CHAPERONIN-60KDA, CH60,NULL;
CHAPERONIN,Chaperonin Cpn60/TCP-1; no
de,NODE_63419_length_412_cov_41.813107.path1.1
(99 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g090130.1 | TCP-1/cpn60 chaperonin family protein | HC | c... 92 1e-19
Medtr1g090140.1 | TCP-1/cpn60 chaperonin family protein | HC | c... 91 2e-19
Medtr8g017080.1 | TCP-1/cpn60 chaperonin family protein | HC | c... 74 3e-14
Medtr1g017390.1 | TCP-1/cpn60 chaperonin family protein | HC | c... 50 7e-07
Medtr1g017380.1 | TCP-1/cpn60 chaperonin family protein | HC | c... 50 7e-07
>Medtr1g090130.1 | TCP-1/cpn60 chaperonin family protein | HC |
chr1:40370583-40364703 | 20130731
Length = 576
Score = 92.0 bits (227), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/64 (73%), Positives = 49/64 (76%), Gaps = 8/64 (12%)
Query: 2 DGKPFFNELEVVEGMKLDRGYISPYFITNQKNQKRELEDSLILIH--------VAVKVLE 53
DGK NELEVVEGMKLDRGYISPYFITNQKNQK ELED L++IH VKVLE
Sbjct: 210 DGKTLHNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLVIIHEKKISSLNAIVKVLE 269
Query: 54 LALK 57
LALK
Sbjct: 270 LALK 273
>Medtr1g090140.1 | TCP-1/cpn60 chaperonin family protein | HC |
chr1:40381503-40376286 | 20130731
Length = 574
Score = 91.3 bits (225), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/64 (75%), Positives = 49/64 (76%), Gaps = 8/64 (12%)
Query: 2 DGKPFFNELEVVEGMKLDRGYISPYFITNQKNQKRELEDSLILIH--------VAVKVLE 53
DGK NELEVVEGMKLDRGYISPYFITNQKNQK ELED LI+IH VKVLE
Sbjct: 210 DGKTLQNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLIIIHEKKISNINSIVKVLE 269
Query: 54 LALK 57
LALK
Sbjct: 270 LALK 273
>Medtr8g017080.1 | TCP-1/cpn60 chaperonin family protein | HC |
chr8:5738864-5745918 | 20130731
Length = 576
Score = 73.9 bits (180), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/66 (60%), Positives = 45/66 (68%), Gaps = 8/66 (12%)
Query: 2 DGKPFFNELEVVEGMKLDRGYISPYFITNQKNQKRELEDSLILIH--------VAVKVLE 53
DG NELEVVEGMKL RGYISPYFIT+QK QK ELE+ ILIH +KVLE
Sbjct: 211 DGNTVDNELEVVEGMKLSRGYISPYFITDQKTQKCELENPFILIHDKKISDMGSLLKVLE 270
Query: 54 LALKWK 59
L++ K
Sbjct: 271 LSVTNK 276
>Medtr1g017390.1 | TCP-1/cpn60 chaperonin family protein | HC |
chr1:4833343-4839399 | 20130731
Length = 591
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 2 DGKPFFNELEVVEGMKLDRGYISPYFITNQKNQKRELEDSLILI 45
+G+ N L VVEGM+ DRGYISPYF+T+ + E E+ +L+
Sbjct: 224 EGRSAENNLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLL 267
>Medtr1g017380.1 | TCP-1/cpn60 chaperonin family protein | HC |
chr1:4821544-4827364 | 20130731
Length = 591
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 2 DGKPFFNELEVVEGMKLDRGYISPYFITNQKNQKRELEDSLILI 45
+G+ N L VVEGM+ DRGYISPYF+T+ + E E+ +L+
Sbjct: 224 EGRSAENNLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLL 267