Miyakogusa Predicted Gene

Lj1g3v5021090.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5021090.1 tr|B9GQH8|B9GQH8_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_756257
PE=4,47.47,1e-18,DUF4228,Protein of unknown function DUF4228;
seg,NULL,CUFF.33853.1
         (196 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g057900.1 | hypothetical protein | LC | chr7:20945872-2094...   105   3e-23
Medtr2g104800.1 | DUF4228 domain protein | HC | chr2:45169879-45...    78   4e-15

>Medtr7g057900.1 | hypothetical protein | LC |
          chr7:20945872-20947041 | 20130731
          Length = 389

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 63/81 (77%)

Query: 3  LLSTRTESHVLKLVHPGGIVELYFNPVLASEIMKKNPRHWVTRPDFFKFPWIVVSPQAIL 62
          + S + E  VLK VHPG  +E++  P++ASE++++NPRH +TRPD F+FPWIVV P++IL
Sbjct: 1  MKSIKRERGVLKFVHPGRHIEIHREPIIASEVLRRNPRHSITRPDVFEFPWIVVKPESIL 60

Query: 63 TPGNVFFIVPSHTIRRLLKNK 83
           PG+VF IVP+HTI  L+K K
Sbjct: 61 VPGSVFLIVPNHTIYNLVKAK 81


>Medtr2g104800.1 | DUF4228 domain protein | HC |
          chr2:45169879-45170681 | 20130731
          Length = 246

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 51/77 (66%)

Query: 3  LLSTRTESHVLKLVHPGGIVELYFNPVLASEIMKKNPRHWVTRPDFFKFPWIVVSPQAIL 62
          + +  T++ +L++VHPGG VE++  PV A+EIM +NPR  V  P  F+ PW VV P  +L
Sbjct: 7  ICTNNTKTMLLRIVHPGGRVEVHDRPVTAAEIMCRNPRCCVAHPFVFQQPWAVVEPDTVL 66

Query: 63 TPGNVFFIVPSHTIRRL 79
            G  F++VP  TIR+L
Sbjct: 67 MLGQKFYVVPISTIRKL 83