Miyakogusa Predicted Gene

Lj1g3v5021030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5021030.1 Non Characterized Hit- tr|D7LXT8|D7LXT8_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,36.65,7e-18,seg,NULL,CUFF.33847.1
         (165 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g116610.1 | hypothetical protein | HC | chr7:48149487-4814...   196   7e-51
Medtr8g011470.1 | pathogenic type III effector avirulence factor...    64   6e-11
Medtr8g011470.2 | pathogenic type III effector avirulence factor...    57   9e-09

>Medtr7g116610.1 | hypothetical protein | HC |
           chr7:48149487-48148391 | 20130731
          Length = 164

 Score =  196 bits (499), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 123/172 (71%), Gaps = 23/172 (13%)

Query: 7   RSGQIPAFGNWDYSNEMPITQYFESARQAGLVNRYSSSSGESDPCNNVRVDH-DLYSVDF 65
           RSGQIPAFGNWD++NE+PITQYFE+ARQAGL+ RYSSSSGESDP  +VR +H DLY+V++
Sbjct: 3   RSGQIPAFGNWDFANELPITQYFETARQAGLI-RYSSSSGESDPYVHVRAEHHDLYAVEY 61

Query: 66  KKKPLRNMPPSTLRKGMRNRERRYP---VKE---GMNMRKQQGKVWDVTEHPRKHHDGVX 119
           KK          +RK  RNRER+Y    V E    MNMRKQQGKV+DV EHPRK  +   
Sbjct: 62  KK---------PVRKATRNRERKYQNVMVNEKETTMNMRKQQGKVYDVMEHPRKQMNKNK 112

Query: 120 XXXXXXXXXX------VDEDLYKIPPELLRRTKRKKMLGFISKCLVPAACVS 165
                           VDEDLYKIPPELLR TKRKKMLGFISKCLVPAACVS
Sbjct: 113 KVHVSAPLQPTRLPKPVDEDLYKIPPELLRTTKRKKMLGFISKCLVPAACVS 164


>Medtr8g011470.1 | pathogenic type III effector avirulence factor
           Avr AvrRpt-cleavage: cleavage site protein | HC |
           chr8:3105314-3102785 | 20130731
          Length = 146

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 19/161 (11%)

Query: 3   DYCKRSGQIPAFGNWDYSNEMPITQYFESARQAGLVNRYSSSSGESDPCNNVRVDHDLYS 62
           +Y  +   +PAFG+WD+++ +P TQ FESARQ G ++   S S E     ++ V  DLY 
Sbjct: 4   EYHFKRNHVPAFGSWDWNDNLPFTQCFESARQGGFLHYSYSESNED---QDLYVAGDLYD 60

Query: 63  VDFKKKPLRNMPPSTLRKGMRNRERRYPVKEGMNMRKQQGKVWDVTEHPRKHHDGVXXXX 122
                  +  +P    R+ +R++  +       +++KQ      V E P           
Sbjct: 61  NHVVTPAMIVVP--RRREKVRSQHEK-------DVKKQNWVSHVVKEPPSP------TPM 105

Query: 123 XXXXXXXVDEDLYKIPPELLR-RTKRKKMLGFISKCLVPAA 162
                  VDEDLYKI P+LL  +T++K+ L F   C    A
Sbjct: 106 SRPTPKPVDEDLYKISPDLLYVKTRKKRGLCFFQSCFTCIA 146


>Medtr8g011470.2 | pathogenic type III effector avirulence factor
           Avr AvrRpt-cleavage: cleavage site protein | HC |
           chr8:3105314-3103121 | 20130731
          Length = 132

 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 18/146 (12%)

Query: 3   DYCKRSGQIPAFGNWDYSNEMPITQYFESARQAGLVNRYSSSSGESDPCNNVRVDHDLYS 62
           +Y  +   +PAFG+WD+++ +P TQ FESARQ G ++   S S E     ++ V  DLY 
Sbjct: 4   EYHFKRNHVPAFGSWDWNDNLPFTQCFESARQGGFLHYSYSESNED---QDLYVAGDLYD 60

Query: 63  VDFKKKPLRNMPPSTLRKGMRNRERRYPVKEGMNMRKQQGKVWDVTEHPRKHHDGVXXXX 122
                  +  +P    R+ +R++  +       +++KQ      V E P           
Sbjct: 61  NHVVTPAMIVVP--RRREKVRSQHEK-------DVKKQNWVSHVVKEPPSP------TPM 105

Query: 123 XXXXXXXVDEDLYKIPPELLRRTKRK 148
                  VDEDLYKI P+LL    RK
Sbjct: 106 SRPTPKPVDEDLYKISPDLLYVKTRK 131