Miyakogusa Predicted Gene

Lj1g3v5020940.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5020940.2 Non Characterized Hit- tr|I1MIM1|I1MIM1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.46928
PE,85.73,0,RB_A,Retinoblastoma-associated protein, A-box;
RB_B,Retinoblastoma-associated protein, B-box; DUF345,CUFF.33841.2
         (901 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g040560.1 | retinoblastoma-related protein | HC | chr8:151...  1477   0.0  
Medtr3g006170.1 | retinoblastoma-related protein, putative | HC ...    99   2e-20

>Medtr8g040560.1 | retinoblastoma-related protein | HC |
           chr8:15105699-15098148 | 20130731
          Length = 1025

 Score = 1477 bits (3824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 721/901 (80%), Positives = 783/901 (86%), Gaps = 5/901 (0%)

Query: 1   MSPPAAPDMELVNPPVAPVDNGDQADSRFADFCKNGLALDEKSCKEAINLFGETEHILLT 60
           MSP A  +ME  +  ++ V+NGDQA SRFA+F KN LALDEKSCKEA++LFGET+H+L+ 
Sbjct: 1   MSPSAETEME--DTKLSVVENGDQAVSRFAEFSKNELALDEKSCKEAMDLFGETKHLLMA 58

Query: 61  YVSSMGNGMSEDAERYWFAFILYSVKRXXXXXXXXXXXXXXXXXXXFCRILRAAKLSIAD 120
            VSSMGNG  E+AERYWFAFILYS+KR                    CRILRAAKL+IAD
Sbjct: 59  NVSSMGNGTIEEAERYWFAFILYSIKRLTQKNEESEKEEIENTGLTLCRILRAAKLNIAD 118

Query: 121 FFKELPQFVVKAGPILSNLYGKDWENRLQAKEMHANAIHLTILSKYYKRIFAEFFVASDA 180
           FFKELPQFVVKAGPILSN +G DWEN+L+AKEMHAN IHL ILSKYYKR+F EFFV++DA
Sbjct: 119 FFKELPQFVVKAGPILSNRFGSDWENKLEAKEMHANTIHLKILSKYYKRVFEEFFVSTDA 178

Query: 181 NIEKNSSVTVHASDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFR 240
           N+E  SSVT   S+ HRFGWLLFLALRVHAFSRFKDLVTCTNGLISI+AILIIHVPARFR
Sbjct: 179 NVENKSSVTGRVSECHRFGWLLFLALRVHAFSRFKDLVTCTNGLISIMAILIIHVPARFR 238

Query: 241 NFNISDSSRFVKKSSKGVDLLASLCNIYNTSEDEMRKTMVKANTLIADILKKKPCLASEC 300
           NFNI DS+RFVKKSSKGVDLLASLCNIYNTSEDE+RKTM +AN L+ADILKK PCLASEC
Sbjct: 239 NFNIHDSARFVKKSSKGVDLLASLCNIYNTSEDELRKTMEQANNLVADILKKTPCLASEC 298

Query: 301 QTDNLENFDRDSLTYFKDLMEESSLPSSLNILEKDYDDMIRNKGELDERLFINEDDXXXX 360
           +T+NLE+FD+D LTYFKDLMEESSL SSLNILE DYD M RNKGELDERLFINEDD    
Sbjct: 299 ETENLEDFDKDGLTYFKDLMEESSLASSLNILENDYDQMTRNKGELDERLFINEDDSLLA 358

Query: 361 XXXXXXXXXXXXXX-KRKFDSIASPAKAVISPLSPHRSPASHANGVTGSTNSKMAAATPV 419
                          KRK+D + SPAK + SPLSP RSPASHANG+ GS NSK+AA TPV
Sbjct: 359 SGSLSGGSSVSAGGVKRKYDLMMSPAKTITSPLSPQRSPASHANGIPGSANSKIAA-TPV 417

Query: 420 STAMTTAKWLRTVVCPLASKPSQELERFLTSCDKDITNDVVCRALIILQTIFPSSPLGER 479
           STAMTTAKWLRTV+ PL SKPSQELERFLTSCD+DIT++VV RA IILQ IFPSSPLG+R
Sbjct: 418 STAMTTAKWLRTVISPLPSKPSQELERFLTSCDRDITSEVVRRAQIILQAIFPSSPLGDR 477

Query: 480 CVTGSLQSANIMDNIWAEQRRLEALKFYYRVLEAMCRAEAQTLHATNLTSLLTNERFHRC 539
           CVTGSLQSAN+MDNIWAEQRRLEA+K YYR+L  MCRAEAQ L   NLTSLLTNERFHRC
Sbjct: 478 CVTGSLQSANLMDNIWAEQRRLEAMKLYYRLLATMCRAEAQIL-GNNLTSLLTNERFHRC 536

Query: 540 MLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLE 599
           MLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIR+EESLPRELRRHLNSLE
Sbjct: 537 MLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRYEESLPRELRRHLNSLE 596

Query: 600 ERLLESMVWQKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMQINFSYGGLPPV 659
           ERLLES+VW+KGSSMYNSLAVARPALSAEINRLG+LAEPMPSLDEIAMQINFS GGLPPV
Sbjct: 597 ERLLESLVWEKGSSMYNSLAVARPALSAEINRLGMLAEPMPSLDEIAMQINFSCGGLPPV 656

Query: 660 PSLPKLETSPIQIGDTRSPKRLCTEHRNVFVERNSFASPVKDRLLPFSNPMSKLPPPPLQ 719
           PSLPK ET P Q GD RSPKRLCTE+RNV VERNSF SPVKDRLL  SN  SKL PPPLQ
Sbjct: 657 PSLPKPETLPAQNGDMRSPKRLCTENRNVLVERNSFTSPVKDRLLHLSNLKSKLLPPPLQ 716

Query: 720 SAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQ 779
           SAFASPTKPNPGGGGETCAETGI++FF KI+KLGAVRISGMVERLQLSQQIRENVY LFQ
Sbjct: 717 SAFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQQIRENVYSLFQ 776

Query: 780 RILNQRTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIQGYRKQPHCKHQVFRSVFVD 839
           RILNQ TSLFFNRHIDQIILCCFYGVAKISQL+LTFREII  YRKQP CK QVFRSVFVD
Sbjct: 777 RILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVD 836

Query: 840 WSSARRNGASKQRTGQDHVDIITFYNQIFIPSVKPLLVELGPGGATMKSDQMHEVNNKND 899
           WSSARRNG S+ RTGQ+H+DII+FYN++FIPSVKPLLVELGPGGAT++SDQ+ E NNKND
Sbjct: 837 WSSARRNGGSRHRTGQEHIDIISFYNEVFIPSVKPLLVELGPGGATVRSDQVPEANNKND 896

Query: 900 G 900
           G
Sbjct: 897 G 897


>Medtr3g006170.1 | retinoblastoma-related protein, putative | HC |
           chr3:570880-569693 | 20130731
          Length = 155

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 54/68 (79%), Gaps = 4/68 (5%)

Query: 162 ILSKYYKRIFAEFFVASDANIEKNSSVTVHASDYHRFGWLLFLALRVHAFSRFKDLVTCT 221
           ++  YYKR+F EFFV++DAN+E  SSVT   S+ HRFGWLLF    VHAFSRFKDLVTCT
Sbjct: 27  VIPWYYKRVFEEFFVSTDANVENKSSVTNRISECHRFGWLLF----VHAFSRFKDLVTCT 82

Query: 222 NGLISILA 229
           NGLISI+ 
Sbjct: 83  NGLISIMT 90