Miyakogusa Predicted Gene

Lj1g3v5020820.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5020820.1 tr|C1FHQ2|C1FHQ2_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_62160
,31.11,5e-18,FAMILY NOT NAMED,NULL; Whirly,Plant transcription factor;
no description,ssDNA-binding transcription,CUFF.33827.1
         (235 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g116270.1 | single-stranded DNA-binding protein WHY3 | HC ...   357   4e-99
Medtr8g468570.1 | whirly transcription factor | HC | chr8:248589...   162   3e-40
Medtr5g038560.1 | single-stranded DNA-binding protein WHY3 | HC ...   160   1e-39

>Medtr7g116270.1 | single-stranded DNA-binding protein WHY3 | HC |
           chr7:47941989-47938429 | 20130731
          Length = 226

 Score =  357 bits (917), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 177/235 (75%), Positives = 195/235 (82%), Gaps = 13/235 (5%)

Query: 1   MLKLLRVLPSTSRNWVLEMEVLSSSRNPQVRDFSTAARETYVAKGYTTDRVFAPYYVYKG 60
           MLK  R+L S+SRN +LE+           RDFSTA    Y AKGYT+DR+FAPY VYKG
Sbjct: 5   MLKFSRMLHSSSRNHLLEVLY--------ARDFSTATNNNYSAKGYTSDRIFAPYSVYKG 56

Query: 61  KAAMSLSPVLPTFTKLDSGALVVERRGSIMMVFTPAIGERKYDWEKRQKFALSATEVGSL 120
           KAA SLSP LPTFTKLDSGALVV+R GSIMM F PAIGERKYDWEKRQ FALSATEVGSL
Sbjct: 57  KAAFSLSPCLPTFTKLDSGALVVDRHGSIMMSFMPAIGERKYDWEKRQIFALSATEVGSL 116

Query: 121 IAMGPQDSCEFFHDPSMSSSNAGQVRKSLSIKPHANSSGYFVSLTVVNNLLNAKENFNVP 180
           IA+GPQDSCEFFHDPSM SSNAGQVRKSLSIKPH+N  GYFVSL+VVN++LN K+NF+VP
Sbjct: 117 IAIGPQDSCEFFHDPSMKSSNAGQVRKSLSIKPHSN--GYFVSLSVVNSVLNTKDNFSVP 174

Query: 181 VTTAEFAVMKTACSFALPHIMGWDRLTNQQSSLPGGTVGLQSKVDKPVFDLEWDK 235
           VTTAEFAVMKTACSFALPHIMGWDRLTNQQSS   GTV  Q K++  + DLEW+K
Sbjct: 175 VTTAEFAVMKTACSFALPHIMGWDRLTNQQSS---GTVSFQPKMNSQILDLEWEK 226


>Medtr8g468570.1 | whirly transcription factor | HC |
           chr8:24858986-24854938 | 20130731
          Length = 267

 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 111/164 (67%)

Query: 45  GYTTDRVFAPYYVYKGKAAMSLSPVLPTFTKLDSGALVVERRGSIMMVFTPAIGERKYDW 104
           G    RV+  + +YKGKAA++++P  P F  LDSGA  + R G +++ F P++G R+YDW
Sbjct: 75  GALPPRVYVGHSIYKGKAALTITPTPPKFVTLDSGAYKISRDGCLLLQFAPSVGPRQYDW 134

Query: 105 EKRQKFALSATEVGSLIAMGPQDSCEFFHDPSMSSSNAGQVRKSLSIKPHANSSGYFVSL 164
            ++Q F LS  E+GS+I++G ++SCEFFHDP    S+ G+VRK L I+P  + SG+F +L
Sbjct: 135 NRKQLFMLSVDEMGSVISLGARESCEFFHDPFKGGSDEGKVRKVLKIEPFPDGSGFFFNL 194

Query: 165 TVVNNLLNAKENFNVPVTTAEFAVMKTACSFALPHIMGWDRLTN 208
           +V + ++N   + N+PV+ AE +V+++   + +P+++GW    N
Sbjct: 195 SVQDKIVNVDVSMNIPVSKAELSVLRSIFKYIMPYLLGWHAFAN 238


>Medtr5g038560.1 | single-stranded DNA-binding protein WHY3 | HC |
           chr5:16941524-16946855 | 20130731
          Length = 261

 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 5/191 (2%)

Query: 45  GYTTDRVFAPYYVYKGKAAMSLSPVLPTFTKLDSGALVVERRGSIMMVFTPAIGERKYDW 104
           G    RV     VYKGKA + +SPVLP FT  DSG   + + G +++ F P+ G R+YDW
Sbjct: 76  GELPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDW 135

Query: 105 EKRQKFALSATEVGSLIAMGPQDSCEFFHDPSMSSSNAGQVRKSLSIKPHANSSGYFVSL 164
            ++Q F+LS  E+G+LI +G ++SCE FHDP M  S+ G+VRK L ++P  + SG+   L
Sbjct: 136 NRKQVFSLSVDEMGNLINLGARESCEIFHDPFMGRSDEGKVRKVLKVEPLHDGSGHMFKL 195

Query: 165 TVVNNLLNAKENFNVPVTTAEFAVMKTACSFALPHIMGWDRLTNQQSSLPGGTVGLQSKV 224
           +V N L N  EN  +PVT AEFAV  +  SF +P+++GW+   +  S  P   +    + 
Sbjct: 196 SVQNQLKNIDENIFIPVTKAEFAVFNSLFSFIMPYLLGWNAFAD--SIKPEVNIANPRRR 253

Query: 225 DKPVFDLEWDK 235
           ++   D EW++
Sbjct: 254 EE---DFEWNR 261