Miyakogusa Predicted Gene

Lj1g3v5020810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v5020810.1 Non Characterized Hit- tr|D8R8L6|D8R8L6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,56.47,3e-19,CMYCBINDINGP,NULL; coiled-coil,NULL; SUBFAMILY NOT
NAMED,NULL; ASSOCIATE OF C-MYC (AMY-1),Associate ,CUFF.33830.1
         (116 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g116300.1 | C-Myc-binding-like protein | HC | chr7:4795441...   179   6e-46
Medtr7g116300.2 | C-Myc-binding-like protein | HC | chr7:4795430...   142   7e-35

>Medtr7g116300.1 | C-Myc-binding-like protein | HC |
           chr7:47954415-47957265 | 20130731
          Length = 117

 Score =  179 bits (453), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 87/95 (91%), Positives = 92/95 (96%)

Query: 18  YLESSGAVDALTKVLVALYEQNDKPSSALEFIQQKLSCPSISEYEKLQAEFSDLQIRYNE 77
           YLESSGAVDALTKVLV+LYEQNDKPSSALEFIQQKLSCPSISEYEKLQA+FSDLQIRYN+
Sbjct: 18  YLESSGAVDALTKVLVSLYEQNDKPSSALEFIQQKLSCPSISEYEKLQAQFSDLQIRYND 77

Query: 78  LLAAHHTTCKELEEMKSSHALAMASSKETTDIEPP 112
           LLAAHH+TCKELEEMKSSHALAM S+KETTD E P
Sbjct: 78  LLAAHHSTCKELEEMKSSHALAMVSTKETTDHESP 112


>Medtr7g116300.2 | C-Myc-binding-like protein | HC |
          chr7:47954307-47956675 | 20130731
          Length = 97

 Score =  142 bits (358), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 67/71 (94%), Positives = 71/71 (100%)

Query: 18 YLESSGAVDALTKVLVALYEQNDKPSSALEFIQQKLSCPSISEYEKLQAEFSDLQIRYNE 77
          YLESSGAVDALTKVLV+LYEQNDKPSSALEFIQQKLSCPSISEYEKLQA+FSDLQIRYN+
Sbjct: 18 YLESSGAVDALTKVLVSLYEQNDKPSSALEFIQQKLSCPSISEYEKLQAQFSDLQIRYND 77

Query: 78 LLAAHHTTCKE 88
          LLAAHH+TCKE
Sbjct: 78 LLAAHHSTCKE 88