Miyakogusa Predicted Gene

Lj1g3v4998490.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4998490.1 Non Characterized Hit- tr|I1JRR9|I1JRR9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.15277
PE,83.07,0,SUBFAMILY NOT NAMED,NULL; PEROXISOME ASSEMBLY PROTEIN 12
(PEROXIN-12),Peroxisome assembly protein 12,CUFF.33797.1
         (379 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g116380.1 | peroxisome biogenesis protein | HC | chr1:5262...   563   e-160
Medtr1g116380.2 | peroxisome biogenesis protein | HC | chr1:5262...   538   e-153

>Medtr1g116380.1 | peroxisome biogenesis protein | HC |
           chr1:52625807-52621881 | 20130731
          Length = 370

 Score =  563 bits (1450), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/379 (73%), Positives = 315/379 (83%), Gaps = 17/379 (4%)

Query: 1   MLFQVGGQGSRPTFFEMAAAEQLPASLRAALTYSIGVLALRRPFLHRFLDYEDESFAFLM 60
           MLFQVGGQGSRPTFFEMAAAEQLP SLRAALTYSIGVLALR PFLH+ LDYE ESF+ LM
Sbjct: 1   MLFQVGGQGSRPTFFEMAAAEQLPRSLRAALTYSIGVLALRTPFLHKLLDYEHESFSLLM 60

Query: 61  LLLESHSLRTTDASFSESLYGLRRRPANVTVDTSDNXXXXXXXPSGLHRRQKVLSVVFLV 120
           L+LE+HSLRTTDASFSESLYGLRRRPAN+ ++ +D+          L RRQK+LS++FLV
Sbjct: 61  LVLEAHSLRTTDASFSESLYGLRRRPANIKLNDNDSSSSSSQ----LRRRQKLLSLLFLV 116

Query: 121 VLPYLKSKLHTIYNREREARLQATLWGDDNEAGVGGFEQDSLVSTPTLDAHASIAARVRS 180
           VLPYLKSKLH+IYN+EREAR+QAT+WGD+NE             + T +A AS+   +  
Sbjct: 117 VLPYLKSKLHSIYNKEREARIQATIWGDENE-------------SYTFNARASVTTLITK 163

Query: 181 RVQKFVGFCYPWLHASTEGMHFTYKMLYLLDATGFYSLALHVLRVQVCRATGQELMDTSS 240
           R QK VG CYP LHA TEG  F Y++LYLLDATG+YSLALH L + VCRATGQELMD SS
Sbjct: 164 RFQKIVGLCYPLLHAGTEGFQFAYQLLYLLDATGYYSLALHALGIHVCRATGQELMDASS 223

Query: 241 RISKMRSRERERLRGPQWLKTLQGALLSCSYTVLDYAQTGLIAAVFFFKMMEWWYQSAEE 300
           RISK+RSRERERLRGPQW+KTLQGALLSC+YTVLDYAQTGLIAAVFFFKMMEWWYQSAEE
Sbjct: 224 RISKIRSRERERLRGPQWIKTLQGALLSCTYTVLDYAQTGLIAAVFFFKMMEWWYQSAEE 283

Query: 301 RMSAPTVYXXXXXXXXXKVAKEGVPLPPDRAVCPLCLQKRVNPSVISVSGFVFCYACVFK 360
           RMSAPTVY         KVAKEGV LP DR +CPLCLQKRVNPSV++VSGFVFCYAC+FK
Sbjct: 284 RMSAPTVYPPPPPPPPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFK 343

Query: 361 YISQYKRCPVTLMPSTVDQ 379
           +++QYKRCP T++P+TVDQ
Sbjct: 344 FLTQYKRCPATMVPATVDQ 362


>Medtr1g116380.2 | peroxisome biogenesis protein | HC |
           chr1:52625733-52621881 | 20130731
          Length = 372

 Score =  538 bits (1387), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/366 (72%), Positives = 302/366 (82%), Gaps = 17/366 (4%)

Query: 1   MLFQVGGQGSRPTFFEMAAAEQLPASLRAALTYSIGVLALRRPFLHRFLDYEDESFAFLM 60
           MLFQVGGQGSRPTFFEMAAAEQLP SLRAALTYSIGVLALR PFLH+ LDYE ESF+ LM
Sbjct: 1   MLFQVGGQGSRPTFFEMAAAEQLPRSLRAALTYSIGVLALRTPFLHKLLDYEHESFSLLM 60

Query: 61  LLLESHSLRTTDASFSESLYGLRRRPANVTVDTSDNXXXXXXXPSGLHRRQKVLSVVFLV 120
           L+LE+HSLRTTDASFSESLYGLRRRPAN+ ++ +D+          L RRQK+LS++FLV
Sbjct: 61  LVLEAHSLRTTDASFSESLYGLRRRPANIKLNDNDSSSSSSQ----LRRRQKLLSLLFLV 116

Query: 121 VLPYLKSKLHTIYNREREARLQATLWGDDNEAGVGGFEQDSLVSTPTLDAHASIAARVRS 180
           VLPYLKSKLH+IYN+EREAR+QAT+WGD+NE             + T +A AS+   +  
Sbjct: 117 VLPYLKSKLHSIYNKEREARIQATIWGDENE-------------SYTFNARASVTTLITK 163

Query: 181 RVQKFVGFCYPWLHASTEGMHFTYKMLYLLDATGFYSLALHVLRVQVCRATGQELMDTSS 240
           R QK VG CYP LHA TEG  F Y++LYLLDATG+YSLALH L + VCRATGQELMD SS
Sbjct: 164 RFQKIVGLCYPLLHAGTEGFQFAYQLLYLLDATGYYSLALHALGIHVCRATGQELMDASS 223

Query: 241 RISKMRSRERERLRGPQWLKTLQGALLSCSYTVLDYAQTGLIAAVFFFKMMEWWYQSAEE 300
           RISK+RSRERERLRGPQW+KTLQGALLSC+YTVLDYAQTGLIAAVFFFKMMEWWYQSAEE
Sbjct: 224 RISKIRSRERERLRGPQWIKTLQGALLSCTYTVLDYAQTGLIAAVFFFKMMEWWYQSAEE 283

Query: 301 RMSAPTVYXXXXXXXXXKVAKEGVPLPPDRAVCPLCLQKRVNPSVISVSGFVFCYACVFK 360
           RMSAPTVY         KVAKEGV LP DR +CPLCLQKRVNPSV++VSGFVFCYAC+FK
Sbjct: 284 RMSAPTVYPPPPPPPPPKVAKEGVQLPSDRTICPLCLQKRVNPSVMTVSGFVFCYACIFK 343

Query: 361 YISQYK 366
           +++Q +
Sbjct: 344 FLTQVR 349