Miyakogusa Predicted Gene

Lj1g3v4997250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4997250.1 Non Characterized Hit- tr|A9NUV7|A9NUV7_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,71.67,2e-19,KH_TYPE_1,K Homology domain, type 1; KH
DOMAIN-CONTAINING PROTEIN,NULL; KH DOMAIN CONTAINING RNA
BIN,CUFF.33914.1
         (116 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764...   136   5e-33
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764...   135   7e-33
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114...   106   4e-24
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114...   106   4e-24
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114...   106   4e-24
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286...    91   3e-19
Medtr2g038020.1 | poly(rC)-binding-like protein | HC | chr2:1650...    86   1e-17
Medtr6g012630.1 | RNA-binding KH domain protein | HC | chr6:3864...    55   1e-08
Medtr6g012630.5 | RNA-binding KH domain protein | HC | chr6:3864...    55   1e-08
Medtr6g012630.2 | RNA-binding KH domain protein | HC | chr6:3864...    55   1e-08
Medtr6g012630.4 | RNA-binding KH domain protein | HC | chr6:3864...    55   1e-08
Medtr6g012630.3 | RNA-binding KH domain protein | HC | chr6:3864...    55   1e-08
Medtr7g011080.2 | RNA-binding KH domain protein | HC | chr7:2893...    55   2e-08
Medtr7g011080.1 | RNA-binding KH domain protein | HC | chr7:2893...    55   2e-08
Medtr7g080630.3 | poly(rC)-binding-like protein | HC | chr7:3070...    49   9e-07
Medtr7g080630.5 | poly(rC)-binding-like protein | HC | chr7:3070...    49   1e-06
Medtr4g093650.1 | RNA-binding KH domain protein | HC | chr4:3709...    48   2e-06
Medtr2g009650.1 | RNA-binding KH domain protein | HC | chr2:2001...    47   3e-06
Medtr7g080630.4 | poly(rC)-binding-like protein | HC | chr7:3070...    46   7e-06
Medtr7g080630.1 | poly(rC)-binding-like protein | HC | chr7:3070...    46   7e-06
Medtr7g080630.2 | poly(rC)-binding-like protein | HC | chr7:3070...    46   7e-06

>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
           chr7:47649189-47656173 | 20130731
          Length = 510

 Score =  136 bits (342), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/105 (69%), Positives = 75/105 (71%), Gaps = 9/105 (8%)

Query: 1   MAEVDQNTGEFEAEQVIENSELPXXXXXXXXXXXXXXXXRPIAAAEKKWPGWPGESVFRM 60
           MAEVDQN GEFE +Q I  +E                   PI   EKKWPGWPGESVFRM
Sbjct: 69  MAEVDQNAGEFEEQQKIVETE---------QNESEKVVEVPIVEPEKKWPGWPGESVFRM 119

Query: 61  LVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSV 105
           LVPA KVGGIIGRKGEFIKKIVEETRARVKILDGPPGT ERAV V
Sbjct: 120 LVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMV 164


>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
           chr7:47649475-47656173 | 20130731
          Length = 442

 Score =  135 bits (341), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 73/105 (69%), Positives = 75/105 (71%), Gaps = 9/105 (8%)

Query: 1   MAEVDQNTGEFEAEQVIENSELPXXXXXXXXXXXXXXXXRPIAAAEKKWPGWPGESVFRM 60
           MAEVDQN GEFE +Q I  +E                   PI   EKKWPGWPGESVFRM
Sbjct: 1   MAEVDQNAGEFEEQQKIVETE---------QNESEKVVEVPIVEPEKKWPGWPGESVFRM 51

Query: 61  LVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSV 105
           LVPA KVGGIIGRKGEFIKKIVEETRARVKILDGPPGT ERAV V
Sbjct: 52  LVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMV 96


>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
           chr1:31149687-31143883 | 20130731
          Length = 568

 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 52/59 (88%)

Query: 47  KKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSV 105
           KKW GWPGE+VFRMLVPA KVG IIGRKGEFIKKI EETRARVKILDGP GT ERAV V
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMV 214


>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
           chr1:31149683-31143883 | 20130731
          Length = 568

 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 52/59 (88%)

Query: 47  KKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSV 105
           KKW GWPGE+VFRMLVPA KVG IIGRKGEFIKKI EETRARVKILDGP GT ERAV V
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMV 214


>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
           chr1:31149691-31143604 | 20130731
          Length = 567

 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/59 (86%), Positives = 52/59 (88%)

Query: 47  KKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSV 105
           KKW GWPGE+VFRMLVPA KVG IIGRKGEFIKKI EETRARVKILDGP GT ERAV V
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMV 214


>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
           chr4:52864244-52858917 | 20130731
          Length = 431

 Score = 90.5 bits (223), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/63 (61%), Positives = 49/63 (77%)

Query: 43  AAAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERA 102
           + +EK+WPGWPG  VFR++VP  KVG IIGRKGE IKK  EET AR+++LD P GTP+R 
Sbjct: 31  SESEKRWPGWPGHCVFRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRI 90

Query: 103 VSV 105
           V +
Sbjct: 91  VLI 93


>Medtr2g038020.1 | poly(rC)-binding-like protein | HC |
           chr2:16509240-16516412 | 20130731
          Length = 470

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 42  IAAAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPER 101
           +   E++WPGWPG+ VFR++VP  KVGGIIGRKG+ IKK+ +ET+ARV++LD   G P+R
Sbjct: 56  VTPPEQRWPGWPGDCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDR 115

Query: 102 AVSV 105
            + +
Sbjct: 116 IILI 119


>Medtr6g012630.1 | RNA-binding KH domain protein | HC |
           chr6:3864952-3868465 | 20130731
          Length = 553

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSHNFF 114
           ++VFR L P  K+G IIGR GE +K++  ET+A+++I +  PG  ER V+V S S     
Sbjct: 46  DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105

Query: 115 TD 116
            D
Sbjct: 106 VD 107


>Medtr6g012630.5 | RNA-binding KH domain protein | HC |
           chr6:3864952-3868465 | 20130731
          Length = 553

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSHNFF 114
           ++VFR L P  K+G IIGR GE +K++  ET+A+++I +  PG  ER V+V S S     
Sbjct: 46  DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105

Query: 115 TD 116
            D
Sbjct: 106 VD 107


>Medtr6g012630.2 | RNA-binding KH domain protein | HC |
           chr6:3864952-3868465 | 20130731
          Length = 553

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSHNFF 114
           ++VFR L P  K+G IIGR GE +K++  ET+A+++I +  PG  ER V+V S S     
Sbjct: 46  DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105

Query: 115 TD 116
            D
Sbjct: 106 VD 107


>Medtr6g012630.4 | RNA-binding KH domain protein | HC |
           chr6:3864952-3867538 | 20130731
          Length = 538

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSHNFF 114
           ++VFR L P  K+G IIGR GE +K++  ET+A+++I +  PG  ER V+V S S     
Sbjct: 46  DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105

Query: 115 TD 116
            D
Sbjct: 106 VD 107


>Medtr6g012630.3 | RNA-binding KH domain protein | HC |
           chr6:3864952-3867231 | 20130731
          Length = 451

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSHNFF 114
           ++VFR L P  K+G IIGR GE +K++  ET+A+++I +  PG  ER V+V S S     
Sbjct: 46  DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105

Query: 115 TD 116
            D
Sbjct: 106 VD 107


>Medtr7g011080.2 | RNA-binding KH domain protein | HC |
           chr7:2893165-2900092 | 20130731
          Length = 571

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSH-NF 113
           ++V+R L P  K+G IIGR GE +K++  +T+A+++I +  PG  ER V+V S S   N 
Sbjct: 48  DTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESND 107

Query: 114 FTD 116
           F D
Sbjct: 108 FED 110


>Medtr7g011080.1 | RNA-binding KH domain protein | HC |
           chr7:2893165-2900092 | 20130731
          Length = 571

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSH-NF 113
           ++V+R L P  K+G IIGR GE +K++  +T+A+++I +  PG  ER V+V S S   N 
Sbjct: 48  DTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESND 107

Query: 114 FTD 116
           F D
Sbjct: 108 FED 110


>Medtr7g080630.3 | poly(rC)-binding-like protein | HC |
           chr7:30700618-30706480 | 20130731
          Length = 312

 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 44  AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           +A K+  G   + +FR++VP+ ++G +IG++G  I+KI E TRA +KI D      ER +
Sbjct: 90  SAAKRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVI 147

Query: 104 SVLSFSSHNFFTD 116
            + S  +    TD
Sbjct: 148 IISSKDNDEMVTD 160


>Medtr7g080630.5 | poly(rC)-binding-like protein | HC |
           chr7:30700621-30706773 | 20130731
          Length = 306

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 44  AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           +A K+  G   + +FR++VP+ ++G +IG++G  I+KI E TRA +KI D      ER +
Sbjct: 90  SAAKRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVI 147

Query: 104 SVLSFSSHNFFTD 116
            + S  +    TD
Sbjct: 148 IISSKDNDEMVTD 160


>Medtr4g093650.1 | RNA-binding KH domain protein | HC |
           chr4:37099130-37092340 | 20130731
          Length = 616

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 54  GESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVL 106
           G  VFR+L  A ++G  IG+ G  IK + + T AR++I D P   PER + V+
Sbjct: 18  GHVVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVI 70


>Medtr2g009650.1 | RNA-binding KH domain protein | HC |
           chr2:2001720-2009761 | 20130731
          Length = 766

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 40  RPIAAAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTP 99
           +P    ++  P   G   FR+L  + ++GG+IG+ G  IK +   T A+++I D P  +P
Sbjct: 32  KPSKPPQQPLPIPAGHVAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESP 91

Query: 100 ERAVSVLSFSS 110
           +R + V+  S+
Sbjct: 92  DRVIMVIGASN 102


>Medtr7g080630.4 | poly(rC)-binding-like protein | HC |
           chr7:30700618-30707328 | 20130731
          Length = 379

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 57  VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSHNFFTD 116
           +FR++VP+ ++G +IG++G  I+KI E TRA +KI D      ER + + S  +    TD
Sbjct: 101 IFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDNDEMVTD 160


>Medtr7g080630.1 | poly(rC)-binding-like protein | HC |
           chr7:30700618-30706480 | 20130731
          Length = 379

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 57  VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSHNFFTD 116
           +FR++VP+ ++G +IG++G  I+KI E TRA +KI D      ER + + S  +    TD
Sbjct: 101 IFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDNDEMVTD 160


>Medtr7g080630.2 | poly(rC)-binding-like protein | HC |
           chr7:30700618-30707393 | 20130731
          Length = 379

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 57  VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVSVLSFSSHNFFTD 116
           +FR++VP+ ++G +IG++G  I+KI E TRA +KI D      ER + + S  +    TD
Sbjct: 101 IFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDNDEMVTD 160