Miyakogusa Predicted Gene
- Lj1g3v4997240.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4997240.1 Non Characterized Hit- tr|I1QUH1|I1QUH1_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1,40.6,5e-16,KH
DOMAIN-CONTAINING PROTEIN,NULL; KH DOMAIN CONTAINING RNA BINDING
PROTEIN,NULL; K homology RNA-bin,CUFF.33913.1
(455 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764... 615 e-176
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764... 614 e-176
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114... 409 e-114
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114... 405 e-113
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114... 405 e-113
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286... 281 1e-75
Medtr2g038020.1 | poly(rC)-binding-like protein | HC | chr2:1650... 264 1e-70
Medtr6g012630.1 | RNA-binding KH domain protein | HC | chr6:3864... 108 1e-23
Medtr6g012630.5 | RNA-binding KH domain protein | HC | chr6:3864... 108 1e-23
Medtr6g012630.2 | RNA-binding KH domain protein | HC | chr6:3864... 108 1e-23
Medtr6g012630.4 | RNA-binding KH domain protein | HC | chr6:3864... 108 1e-23
Medtr6g012630.3 | RNA-binding KH domain protein | HC | chr6:3864... 108 1e-23
Medtr3g110650.2 | RNA-binding KH domain protein | HC | chr3:5171... 100 2e-21
Medtr3g110650.1 | RNA-binding KH domain protein | HC | chr3:5171... 100 2e-21
Medtr7g011080.2 | RNA-binding KH domain protein | HC | chr7:2893... 99 7e-21
Medtr7g011080.1 | RNA-binding KH domain protein | HC | chr7:2893... 99 7e-21
Medtr7g080630.5 | poly(rC)-binding-like protein | HC | chr7:3070... 99 7e-21
Medtr7g080630.4 | poly(rC)-binding-like protein | HC | chr7:3070... 99 8e-21
Medtr7g080630.1 | poly(rC)-binding-like protein | HC | chr7:3070... 99 8e-21
Medtr7g080630.2 | poly(rC)-binding-like protein | HC | chr7:3070... 99 8e-21
Medtr7g080630.3 | poly(rC)-binding-like protein | HC | chr7:3070... 99 1e-20
Medtr2g019090.1 | RNA-binding KH domain protein | HC | chr2:6163... 97 4e-20
Medtr4g093650.1 | RNA-binding KH domain protein | HC | chr4:3709... 96 6e-20
Medtr4g008080.1 | RNA-binding KH domain protein | HC | chr4:1379... 92 1e-18
Medtr2g009650.1 | RNA-binding KH domain protein | HC | chr2:2001... 84 3e-16
Medtr5g031720.1 | RNA-binding KH domain protein | HC | chr5:1360... 79 1e-14
Medtr3g091800.1 | RNA-binding KH domain protein | HC | chr3:4179... 77 4e-14
Medtr2g019090.2 | RNA-binding KH domain protein | HC | chr2:6163... 77 5e-14
Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | H... 65 1e-10
Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | H... 65 1e-10
Medtr4g116880.1 | poly(RC)-binding protein, putative | HC | chr4... 54 2e-07
Medtr1g016760.1 | RNA-binding KH domain protein | HC | chr1:4457... 53 5e-07
Medtr5g008420.1 | RNA-binding KH domain protein | HC | chr5:1773... 53 7e-07
>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
chr7:47649189-47656173 | 20130731
Length = 510
Score = 615 bits (1585), Expect = e-176, Method: Compositional matrix adjust.
Identities = 327/444 (73%), Positives = 348/444 (78%), Gaps = 24/444 (5%)
Query: 1 MAEVDQNTGEFEAEQVIENSELPXXXXXXXXXXXXXXXXRPIAAAEKKWPGWPGESVFRM 60
MAEVDQN GEFE +Q I +E PI EKKWPGWPGESVFRM
Sbjct: 69 MAEVDQNAGEFEEQQKIVETE---------QNESEKVVEVPIVEPEKKWPGWPGESVFRM 119
Query: 61 LVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSSLPPAID 120
LVPA KVGGIIGRKGEFIKKIVEETRARVKILDGPPGT ERAVMVSAK+EP SSLPPA+D
Sbjct: 120 LVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSAKDEPGSSLPPAVD 179
Query: 121 GLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCI 180
GLL+ HKR+IDGL+ A SG+ KVSTK LVPASQAGSLIGKQGGTVKSIQEASNCI
Sbjct: 180 GLLKAHKRLIDGLD-----APSGLAGKVSTKFLVPASQAGSLIGKQGGTVKSIQEASNCI 234
Query: 181 VRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDRGVIPIFEMNMQTA 240
VRVLGAEDLP FALQDDRVVEV+GDP GVHKAVE+I SHL+KFLVDR +IPIFEM+MQ A
Sbjct: 235 VRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFLVDRSIIPIFEMSMQMA 294
Query: 241 NSHHVEHMP----PHQSWXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHDNYYPPAEMPPP 296
N+H VEHMP PHQSW RQ DNYYPPAEMPPP
Sbjct: 295 NNHPVEHMPVPPPPHQSWGPPQGLPPNAGGGPGFGLAPQFMPPR-RQVDNYYPPAEMPPP 353
Query: 297 VDRQPHYGISAYGRDASVGVHASSNTQSAPSIVTQITQQMQIPLSYADAVIGTAGASISY 356
+D+QPH+GISAYGRDAS+GVHASSNTQSAPS+VTQITQQMQIPLSYADAVIGTAG +ISY
Sbjct: 354 LDKQPHHGISAYGRDASIGVHASSNTQSAPSMVTQITQQMQIPLSYADAVIGTAGTNISY 413
Query: 357 IRRASGATVAIQETRGVPGEMTVEISGTAAQVQTAQQLIQNFMAEXXXXXXXXXXXXTVG 416
IRRASGATV IQETRGVPGEMTVEISGTA+QVQTAQQLIQNFMAE T G
Sbjct: 414 IRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAE----AAAPAQQQTGG 469
Query: 417 PP-DQGYNSYPAHGSVYTSPPSNP 439
PP DQGYNSYPAH SVY SPPSNP
Sbjct: 470 PPADQGYNSYPAHSSVYASPPSNP 493
>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
chr7:47649475-47656173 | 20130731
Length = 442
Score = 614 bits (1584), Expect = e-176, Method: Compositional matrix adjust.
Identities = 327/444 (73%), Positives = 348/444 (78%), Gaps = 24/444 (5%)
Query: 1 MAEVDQNTGEFEAEQVIENSELPXXXXXXXXXXXXXXXXRPIAAAEKKWPGWPGESVFRM 60
MAEVDQN GEFE +Q I +E PI EKKWPGWPGESVFRM
Sbjct: 1 MAEVDQNAGEFEEQQKIVETE---------QNESEKVVEVPIVEPEKKWPGWPGESVFRM 51
Query: 61 LVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSSLPPAID 120
LVPA KVGGIIGRKGEFIKKIVEETRARVKILDGPPGT ERAVMVSAK+EP SSLPPA+D
Sbjct: 52 LVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSAKDEPGSSLPPAVD 111
Query: 121 GLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCI 180
GLL+ HKR+IDGL+ A SG+ KVSTK LVPASQAGSLIGKQGGTVKSIQEASNCI
Sbjct: 112 GLLKAHKRLIDGLD-----APSGLAGKVSTKFLVPASQAGSLIGKQGGTVKSIQEASNCI 166
Query: 181 VRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDRGVIPIFEMNMQTA 240
VRVLGAEDLP FALQDDRVVEV+GDP GVHKAVE+I SHL+KFLVDR +IPIFEM+MQ A
Sbjct: 167 VRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFLVDRSIIPIFEMSMQMA 226
Query: 241 NSHHVEHMP----PHQSWXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHDNYYPPAEMPPP 296
N+H VEHMP PHQSW RQ DNYYPPAEMPPP
Sbjct: 227 NNHPVEHMPVPPPPHQSWGPPQGLPPNAGGGPGFGLAPQFMPPR-RQVDNYYPPAEMPPP 285
Query: 297 VDRQPHYGISAYGRDASVGVHASSNTQSAPSIVTQITQQMQIPLSYADAVIGTAGASISY 356
+D+QPH+GISAYGRDAS+GVHASSNTQSAPS+VTQITQQMQIPLSYADAVIGTAG +ISY
Sbjct: 286 LDKQPHHGISAYGRDASIGVHASSNTQSAPSMVTQITQQMQIPLSYADAVIGTAGTNISY 345
Query: 357 IRRASGATVAIQETRGVPGEMTVEISGTAAQVQTAQQLIQNFMAEXXXXXXXXXXXXTVG 416
IRRASGATV IQETRGVPGEMTVEISGTA+QVQTAQQLIQNFMAE T G
Sbjct: 346 IRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAE----AAAPAQQQTGG 401
Query: 417 PP-DQGYNSYPAHGSVYTSPPSNP 439
PP DQGYNSYPAH SVY SPPSNP
Sbjct: 402 PPADQGYNSYPAHSSVYASPPSNP 425
>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
chr1:31149691-31143604 | 20130731
Length = 567
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/394 (56%), Positives = 272/394 (69%), Gaps = 6/394 (1%)
Query: 47 KKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVS 106
KKW GWPGE+VFRMLVPA KVG IIGRKGEFIKKI EETRARVKILDGP GT ERAVMVS
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVS 215
Query: 107 AKEEPDSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQ 166
AKEEPD +PPA++GLLRVHK+V + + ++ + G T+LLV +QAGSLIGKQ
Sbjct: 216 AKEEPDRPIPPAVEGLLRVHKQVAN-VVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQ 274
Query: 167 GGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVD 226
G T+K Q+++ C +R+LG+E LP FAL+DD +VE+ G+P GVHKAVELI HLRKFLVD
Sbjct: 275 GSTIKIFQDSTGCNIRILGSEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFLVD 334
Query: 227 RGVIPIFEMNMQTANSHHVEHM-PPHQSWXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHD 285
R ++ +FE MQ + ++M P +D
Sbjct: 335 RSIVGVFETQMQRQDVRGNQNMPPHQPWGPPPQGFPAHGGGGGPAFPPNPQYMPPPHNYD 394
Query: 286 NYYPPAEMPPPVDRQPHYG-ISAYGRDASVGVHASSNTQSAPSIVTQITQQMQIPLSYAD 344
NYYPPA++ PP+D+ H G AY RDAS+G+H SS Q S T++TQ MQIPLS+AD
Sbjct: 395 NYYPPADL-PPIDKHMHQGPPPAYARDASLGIH-SSGGQPQQSGGTKVTQHMQIPLSFAD 452
Query: 345 AVIGTAGASISYIRRASGATVAIQETRGVPGEMTVEISGTAAQVQTAQQLIQNFMAEXXX 404
AVIG +GA+ISYIRRASGA++ IQETRGVPGEMTVEISGTA+Q+Q AQQL+QNFMAE
Sbjct: 453 AVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAAN 512
Query: 405 XXXXXXXXXTVGPP-DQGYNSYPAHGSVYTSPPS 437
+G +QGYNSYP + VY SP S
Sbjct: 513 AVAAAQAQDHMGGTVNQGYNSYPTNAPVYASPQS 546
>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
chr1:31149687-31143883 | 20130731
Length = 568
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/395 (56%), Positives = 272/395 (68%), Gaps = 7/395 (1%)
Query: 47 KKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVS 106
KKW GWPGE+VFRMLVPA KVG IIGRKGEFIKKI EETRARVKILDGP GT ERAVMVS
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVS 215
Query: 107 AKEEPDSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQ 166
AKEEPD +PPA++GLLRVHK+V + + ++ + G T+LLV +QAGSLIGKQ
Sbjct: 216 AKEEPDRPIPPAVEGLLRVHKQVAN-VVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQ 274
Query: 167 GGTVKSIQEASNCIVRVLG-AEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLV 225
G T+K Q+++ C +R+LG AE LP FAL+DD +VE+ G+P GVHKAVELI HLRKFLV
Sbjct: 275 GSTIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFLV 334
Query: 226 DRGVIPIFEMNMQTANSHHVEHM-PPHQSWXXXXXXXXXXXXXXXXXXXXXXXXXXXRQH 284
DR ++ +FE MQ + ++M P +
Sbjct: 335 DRSIVGVFETQMQRQDVRGNQNMPPHQPWGPPPQGFPAHGGGGGPAFPPNPQYMPPPHNY 394
Query: 285 DNYYPPAEMPPPVDRQPHYG-ISAYGRDASVGVHASSNTQSAPSIVTQITQQMQIPLSYA 343
DNYYPPA++ PP+D+ H G AY RDAS+G+H SS Q S T++TQ MQIPLS+A
Sbjct: 395 DNYYPPADL-PPIDKHMHQGPPPAYARDASLGIH-SSGGQPQQSGGTKVTQHMQIPLSFA 452
Query: 344 DAVIGTAGASISYIRRASGATVAIQETRGVPGEMTVEISGTAAQVQTAQQLIQNFMAEXX 403
DAVIG +GA+ISYIRRASGA++ IQETRGVPGEMTVEISGTA+Q+Q AQQL+QNFMAE
Sbjct: 453 DAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAA 512
Query: 404 XXXXXXXXXXTVGPP-DQGYNSYPAHGSVYTSPPS 437
+G +QGYNSYP + VY SP S
Sbjct: 513 NAVAAAQAQDHMGGTVNQGYNSYPTNAPVYASPQS 547
>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
chr1:31149683-31143883 | 20130731
Length = 568
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/395 (56%), Positives = 272/395 (68%), Gaps = 7/395 (1%)
Query: 47 KKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVS 106
KKW GWPGE+VFRMLVPA KVG IIGRKGEFIKKI EETRARVKILDGP GT ERAVMVS
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVS 215
Query: 107 AKEEPDSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQ 166
AKEEPD +PPA++GLLRVHK+V + + ++ + G T+LLV +QAGSLIGKQ
Sbjct: 216 AKEEPDRPIPPAVEGLLRVHKQVAN-VVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQ 274
Query: 167 GGTVKSIQEASNCIVRVLG-AEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLV 225
G T+K Q+++ C +R+LG AE LP FAL+DD +VE+ G+P GVHKAVELI HLRKFLV
Sbjct: 275 GSTIKIFQDSTGCNIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFLV 334
Query: 226 DRGVIPIFEMNMQTANSHHVEHM-PPHQSWXXXXXXXXXXXXXXXXXXXXXXXXXXXRQH 284
DR ++ +FE MQ + ++M P +
Sbjct: 335 DRSIVGVFETQMQRQDVRGNQNMPPHQPWGPPPQGFPAHGGGGGPAFPPNPQYMPPPHNY 394
Query: 285 DNYYPPAEMPPPVDRQPHYG-ISAYGRDASVGVHASSNTQSAPSIVTQITQQMQIPLSYA 343
DNYYPPA++ PP+D+ H G AY RDAS+G+H SS Q S T++TQ MQIPLS+A
Sbjct: 395 DNYYPPADL-PPIDKHMHQGPPPAYARDASLGIH-SSGGQPQQSGGTKVTQHMQIPLSFA 452
Query: 344 DAVIGTAGASISYIRRASGATVAIQETRGVPGEMTVEISGTAAQVQTAQQLIQNFMAEXX 403
DAVIG +GA+ISYIRRASGA++ IQETRGVPGEMTVEISGTA+Q+Q AQQL+QNFMAE
Sbjct: 453 DAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAA 512
Query: 404 XXXXXXXXXXTVGPP-DQGYNSYPAHGSVYTSPPS 437
+G +QGYNSYP + VY SP S
Sbjct: 513 NAVAAAQAQDHMGGTVNQGYNSYPTNAPVYASPQS 547
>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
chr4:52864244-52858917 | 20130731
Length = 431
Score = 281 bits (719), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/357 (43%), Positives = 221/357 (61%), Gaps = 16/357 (4%)
Query: 45 AEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVM 104
+EK+WPGWPG VFR++VP KVG IIGRKGE IKK EET AR+++LD P GTP+R V+
Sbjct: 33 SEKRWPGWPGHCVFRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRIVL 92
Query: 105 VSAKEEPDSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIG 164
+S KE+ ++ L PA+D +LR+ KRV E D+ + ++ VA S +LLV ++QA +LIG
Sbjct: 93 ISGKEDLEAPLSPAMDAILRIFKRVSGLSETDNNNTAAAGVALCSIRLLVASTQAINLIG 152
Query: 165 KQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFL 224
KQG ++K+IQE + ++RVL ++LPS+A D+R++++ G+ V KA+E +V HLRKFL
Sbjct: 153 KQGSSIKAIQENTGAVIRVLSGDELPSYAGADERIIDLQGETLKVLKALEAVVGHLRKFL 212
Query: 225 VDRGVIPIFEMNMQTANSHHVEHMPPHQSWXXXXXXXXXXXXXXXXXXXXXXXXXXXRQH 284
VD VIP+FE +T N+ + +W +
Sbjct: 213 VDSSVIPLFE---KTCNA-TISQDRQTDAWADKPSLYSASQPSIVADIPT--------KR 260
Query: 285 DNYYPPAEMPPPVDRQPHYGISAYGRDASVGVHASSN--TQSAPSIVTQITQQMQIPLSY 342
D+++ E S YG+D+S S+ +++ SIVT + Q MQIPLSY
Sbjct: 261 DSFFADRESQLDSLLSSSTM-SLYGQDSSSISGLRSSAFNRASASIVTTVIQTMQIPLSY 319
Query: 343 ADAVIGTAGASISYIRRASGATVAIQETRGVPGEMTVEISGTAAQVQTAQQLIQNFM 399
A+ +IG G +I YIRR SGA + +QE+R VP E+ VEI GT+ QVQTAQQLIQ +
Sbjct: 320 AEDIIGIQGTNIDYIRRTSGAILTVQESR-VPDEIIVEIKGTSTQVQTAQQLIQEVI 375
>Medtr2g038020.1 | poly(rC)-binding-like protein | HC |
chr2:16509240-16516412 | 20130731
Length = 470
Score = 264 bits (675), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/363 (41%), Positives = 219/363 (60%), Gaps = 26/363 (7%)
Query: 46 EKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMV 105
E++WPGWPG+ VFR++VP KVGGIIGRKG+ IKK+ +ET+ARV++LD G P+R +++
Sbjct: 60 EQRWPGWPGDCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIILI 119
Query: 106 SAKEEPDSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGK 165
S KEE ++++ PA+D ++R+ KRV E DS + V S +LLV ++QA SLIGK
Sbjct: 120 SGKEELEAAISPAMDAVIRIFKRVSGLSETDSENKGPAGVTLCSIRLLVASTQAISLIGK 179
Query: 166 QGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLV 225
QG ++SIQE+S VRVL +++ FA ++R+V++ G+ V KA+E ++ HLRKFLV
Sbjct: 180 QGTIIRSIQESSGASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAVIGHLRKFLV 239
Query: 226 DRGVIPIFEMNMQTANSHHVEHMPPHQSWXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHD 285
D ++P++E +T N+ + ++W D
Sbjct: 240 DHSILPVYE---KTYNASLPQQDRQAETWSDKPLLHTTSQTSMF--------------SD 282
Query: 286 NYYPPAEMPPPVDRQ-------PHYGISAYGRDASVGVHASSNTQSAPS-IVTQITQQMQ 337
+P DR+ +S YG+D+S+ SS+ + IVT + Q MQ
Sbjct: 283 IPFPTKRDSVFADRESHLDSLLSSSTMSLYGQDSSLSGVRSSSLSRVGAPIVTTVIQTMQ 342
Query: 338 IPLSYADAVIGTAGASISYIRRASGATVAIQETRGVPGEMTVEISGTAAQVQTAQQLIQN 397
IPLSYA+ +IG G +I YIRR SGA + +QE+R VP E+ VEI GT +QVQTAQQLIQ
Sbjct: 343 IPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESR-VPDEIVVEIKGTTSQVQTAQQLIQE 401
Query: 398 FMA 400
++
Sbjct: 402 VIS 404
>Medtr6g012630.1 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 101/174 (58%), Gaps = 11/174 (6%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAK------ 108
++VFR L P K+G IIGR GE +K++ ET+A+++I + PG ER V V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 109 -EEPDSSLPPAIDGLLRVHKRVI-DGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQ 166
++ D + PA D L ++H RV+ + L +D +V+ KLLVP+ Q G ++GK
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGG---PQVNAKLLVPSDQIGCVLGKG 162
Query: 167 GGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
G V++++ + +R+L + +P+ AL+ D +V++ GD V KA+ I S L
Sbjct: 163 GQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 96/180 (53%), Gaps = 8/180 (4%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E R++ P +GG+IG+ G I +I +++ A +K+ D + + +S KE + +
Sbjct: 288 EFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEET 346
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
P ++ + + R + E DS G+++ +T+LLV +S+ G LIGK G + ++
Sbjct: 347 FSPTVEAAVLLQPRCSEKSERDS-----GIIS-FTTRLLVSSSRIGCLIGKGGSIITEMR 400
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDR-GVIPIF 233
+ +R+L E+LP A DD +V++ GD A+ +++ LR L DR G +P F
Sbjct: 401 RLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPGF 460
>Medtr6g012630.5 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 101/174 (58%), Gaps = 11/174 (6%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAK------ 108
++VFR L P K+G IIGR GE +K++ ET+A+++I + PG ER V V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 109 -EEPDSSLPPAIDGLLRVHKRVI-DGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQ 166
++ D + PA D L ++H RV+ + L +D +V+ KLLVP+ Q G ++GK
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGG---PQVNAKLLVPSDQIGCVLGKG 162
Query: 167 GGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
G V++++ + +R+L + +P+ AL+ D +V++ GD V KA+ I S L
Sbjct: 163 GQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 96/180 (53%), Gaps = 8/180 (4%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E R++ P +GG+IG+ G I +I +++ A +K+ D + + +S KE + +
Sbjct: 288 EFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEET 346
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
P ++ + + R + E DS G+++ +T+LLV +S+ G LIGK G + ++
Sbjct: 347 FSPTVEAAVLLQPRCSEKSERDS-----GIIS-FTTRLLVSSSRIGCLIGKGGSIITEMR 400
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDR-GVIPIF 233
+ +R+L E+LP A DD +V++ GD A+ +++ LR L DR G +P F
Sbjct: 401 RLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPGF 460
>Medtr6g012630.2 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 101/174 (58%), Gaps = 11/174 (6%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAK------ 108
++VFR L P K+G IIGR GE +K++ ET+A+++I + PG ER V V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 109 -EEPDSSLPPAIDGLLRVHKRVI-DGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQ 166
++ D + PA D L ++H RV+ + L +D +V+ KLLVP+ Q G ++GK
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGG---PQVNAKLLVPSDQIGCVLGKG 162
Query: 167 GGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
G V++++ + +R+L + +P+ AL+ D +V++ GD V KA+ I S L
Sbjct: 163 GQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 96/180 (53%), Gaps = 8/180 (4%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E R++ P +GG+IG+ G I +I +++ A +K+ D + + +S KE + +
Sbjct: 288 EFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEET 346
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
P ++ + + R + E DS G+++ +T+LLV +S+ G LIGK G + ++
Sbjct: 347 FSPTVEAAVLLQPRCSEKSERDS-----GIIS-FTTRLLVSSSRIGCLIGKGGSIITEMR 400
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDR-GVIPIF 233
+ +R+L E+LP A DD +V++ GD A+ +++ LR L DR G +P F
Sbjct: 401 RLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPGF 460
>Medtr6g012630.4 | RNA-binding KH domain protein | HC |
chr6:3864952-3867538 | 20130731
Length = 538
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 101/174 (58%), Gaps = 11/174 (6%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAK------ 108
++VFR L P K+G IIGR GE +K++ ET+A+++I + PG ER V V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 109 -EEPDSSLPPAIDGLLRVHKRVI-DGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQ 166
++ D + PA D L ++H RV+ + L +D +V+ KLLVP+ Q G ++GK
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGG---PQVNAKLLVPSDQIGCVLGKG 162
Query: 167 GGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
G V++++ + +R+L + +P+ AL+ D +V++ GD V KA+ I S L
Sbjct: 163 GQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 96/180 (53%), Gaps = 8/180 (4%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E R++ P +GG+IG+ G I +I +++ A +K+ D + + +S KE + +
Sbjct: 288 EFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEET 346
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
P ++ + + R + E DS G+++ +T+LLV +S+ G LIGK G + ++
Sbjct: 347 FSPTVEAAVLLQPRCSEKSERDS-----GIIS-FTTRLLVSSSRIGCLIGKGGSIITEMR 400
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDR-GVIPIF 233
+ +R+L E+LP A DD +V++ GD A+ +++ LR L DR G +P F
Sbjct: 401 RLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPGF 460
>Medtr6g012630.3 | RNA-binding KH domain protein | HC |
chr6:3864952-3867231 | 20130731
Length = 451
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 101/174 (58%), Gaps = 11/174 (6%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAK------ 108
++VFR L P K+G IIGR GE +K++ ET+A+++I + PG ER V V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 109 -EEPDSSLPPAIDGLLRVHKRVI-DGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQ 166
++ D + PA D L ++H RV+ + L +D +V+ KLLVP+ Q G ++GK
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGG---PQVNAKLLVPSDQIGCVLGKG 162
Query: 167 GGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
G V++++ + +R+L + +P+ AL+ D +V++ GD V KA+ I S L
Sbjct: 163 GQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 7/147 (4%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E R++ P +GG+IG+ G I +I +++ A +K+ D + + +S KE + +
Sbjct: 288 EFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEET 346
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
P ++ + + R + E DS G+++ +T+LLV +S+ G LIGK G + ++
Sbjct: 347 FSPTVEAAVLLQPRCSEKSERDS-----GIIS-FTTRLLVSSSRIGCLIGKGGSIITEMR 400
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVE 201
+ +R+L E+LP A DD +V+
Sbjct: 401 RLTKSNIRILSKENLPKIASDDDEMVQ 427
>Medtr3g110650.2 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 147/355 (41%), Gaps = 26/355 (7%)
Query: 58 FRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSSLPP 117
FR+L P+ VG +IG+ G IK + +ET + +K+++ PG+ + +++S PD + P
Sbjct: 314 FRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPAHPDDRISP 373
Query: 118 AIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQEAS 177
+ + RV R+ + + H+ ++A+V +V + G L+GK G + ++ S
Sbjct: 374 VQEAIFRVQNRISRAMLDSKEHS---MLARV----IVSSKHIGCLLGKGGSIIAEMRNLS 426
Query: 178 NCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDRGVIPIFEMNM 237
+R+LG + P +DD V++V G VH A+ I + LR R P
Sbjct: 427 GAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFF-RDAFPSANFPS 485
Query: 238 QTANSHHVEHMPPHQSWXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHDNYYPPAEMPPPV 297
+A PP+ +N Y P
Sbjct: 486 NSAFLDQHSPFPPYLGRRGLSPPGMYSDLGPRHPHADFPLDDHPPFMNNMYRSGIPPLIS 545
Query: 298 DRQP-----------HYGISAYGRDASVGVHASSNTQSAPSIVTQITQQMQIPLSYADAV 346
+R+P H G+ + A S + I+T T ++ +P + +
Sbjct: 546 ERKPWGPKGILEGGGHMGLPEF---AGGPRRISGFAGGSQPIITSTTVEVVVPRALVAEI 602
Query: 347 IGTAGASISYIRRASGATVAIQETRGVPG--EMTVEISGTAAQVQTAQQLIQNFM 399
G G + I + S A V I T +PG E + ISGT Q AQ LIQ F+
Sbjct: 603 YGENGECLKQILQISDANVII--TDPIPGAVETKIIISGTPEQTNAAQSLIQAFV 655
>Medtr3g110650.1 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 147/355 (41%), Gaps = 26/355 (7%)
Query: 58 FRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSSLPP 117
FR+L P+ VG +IG+ G IK + +ET + +K+++ PG+ + +++S PD + P
Sbjct: 314 FRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPAHPDDRISP 373
Query: 118 AIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQEAS 177
+ + RV R+ + + H+ ++A+V +V + G L+GK G + ++ S
Sbjct: 374 VQEAIFRVQNRISRAMLDSKEHS---MLARV----IVSSKHIGCLLGKGGSIIAEMRNLS 426
Query: 178 NCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDRGVIPIFEMNM 237
+R+LG + P +DD V++V G VH A+ I + LR R P
Sbjct: 427 GAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFF-RDAFPSANFPS 485
Query: 238 QTANSHHVEHMPPHQSWXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHDNYYPPAEMPPPV 297
+A PP+ +N Y P
Sbjct: 486 NSAFLDQHSPFPPYLGRRGLSPPGMYSDLGPRHPHADFPLDDHPPFMNNMYRSGIPPLIS 545
Query: 298 DRQP-----------HYGISAYGRDASVGVHASSNTQSAPSIVTQITQQMQIPLSYADAV 346
+R+P H G+ + A S + I+T T ++ +P + +
Sbjct: 546 ERKPWGPKGILEGGGHMGLPEF---AGGPRRISGFAGGSQPIITSTTVEVVVPRALVAEI 602
Query: 347 IGTAGASISYIRRASGATVAIQETRGVPG--EMTVEISGTAAQVQTAQQLIQNFM 399
G G + I + S A V I T +PG E + ISGT Q AQ LIQ F+
Sbjct: 603 YGENGECLKQILQISDANVII--TDPIPGAVETKIIISGTPEQTNAAQSLIQAFV 655
>Medtr7g011080.2 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 102/180 (56%), Gaps = 16/180 (8%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSA------- 107
++V+R L P K+G IIGR GE +K++ +T+A+++I + PG ER V V +
Sbjct: 48 DTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESND 107
Query: 108 KEEPDSSLPPAIDGLLRVHKRVI----DGLEN---DSTHASSGVVAKVSTKLLVPASQAG 160
E+ + PA+D L+R+H++VI G+E+ D G + V+ KLLV + Q G
Sbjct: 108 FEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDL--VTAKLLVASDQIG 165
Query: 161 SLIGKQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
+IGK G V++I+ + +R+L + LP AL D +V++ G+ V KA+ + + L
Sbjct: 166 CVIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAARL 225
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 79 KKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSSLPPAIDGLLRVHKRVIDGLENDST 138
+I +++ A +K+ + + +SA+E + I+ + + R + +E DS
Sbjct: 319 NQIRQDSGANIKVDSSATEGDDCLIAISARELFEDPFSATIEAAVLLQPRCSEKVERDS- 377
Query: 139 HASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDR 198
G+++ +++LLV +S+ G LIGK G + ++ + +R+L EDLP A +DD
Sbjct: 378 ----GILS-FTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDE 432
Query: 199 VVEVLGDPTGVHKAVELIVSHLRKFLVDR 227
+V++ G+ A+ +++ LR L D+
Sbjct: 433 MVQISGELDIAKDALLQVLTRLRANLFDK 461
>Medtr7g011080.1 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 102/180 (56%), Gaps = 16/180 (8%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSA------- 107
++V+R L P K+G IIGR GE +K++ +T+A+++I + PG ER V V +
Sbjct: 48 DTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESND 107
Query: 108 KEEPDSSLPPAIDGLLRVHKRVI----DGLEN---DSTHASSGVVAKVSTKLLVPASQAG 160
E+ + PA+D L+R+H++VI G+E+ D G + V+ KLLV + Q G
Sbjct: 108 FEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDL--VTAKLLVASDQIG 165
Query: 161 SLIGKQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
+IGK G V++I+ + +R+L + LP AL D +V++ G+ V KA+ + + L
Sbjct: 166 CVIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAARL 225
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 79 KKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSSLPPAIDGLLRVHKRVIDGLENDST 138
+I +++ A +K+ + + +SA+E + I+ + + R + +E DS
Sbjct: 319 NQIRQDSGANIKVDSSATEGDDCLIAISARELFEDPFSATIEAAVLLQPRCSEKVERDS- 377
Query: 139 HASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDR 198
G+++ +++LLV +S+ G LIGK G + ++ + +R+L EDLP A +DD
Sbjct: 378 ----GILS-FTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDE 432
Query: 199 VVEVLGDPTGVHKAVELIVSHLRKFLVDR 227
+V++ G+ A+ +++ LR L D+
Sbjct: 433 MVQISGELDIAKDALLQVLTRLRANLFDK 461
>Medtr7g080630.5 | poly(rC)-binding-like protein | HC |
chr7:30700621-30706773 | 20130731
Length = 306
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 107/183 (58%), Gaps = 7/183 (3%)
Query: 44 AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
+A K+ G + +FR++VP+ ++G +IG++G I+KI E TRA +KI D ER +
Sbjct: 90 SAAKRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVI 147
Query: 104 MVSAKEEPDSSLPPAIDGLLRVHKRVI--DGLENDSTHASSGVVAKVSTKLLVPASQAGS 161
++S+K+ D + A L ++ ++ D D++ ++G VA + +LL+ SQAG
Sbjct: 148 IISSKDN-DEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGG 206
Query: 162 LIGKQGGTVKSIQEASNCIVRVLGAEDLP--SFALQDDRVVEVLGDPTGVHKAVELIVSH 219
LIG G ++ ++ +S ++ VL LP + A + DRVV++ GD + V KA+E I
Sbjct: 207 LIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQ 266
Query: 220 LRK 222
LR+
Sbjct: 267 LRE 269
>Medtr7g080630.4 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707328 | 20130731
Length = 379
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 107/183 (58%), Gaps = 7/183 (3%)
Query: 44 AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
+A K+ G + +FR++VP+ ++G +IG++G I+KI E TRA +KI D ER +
Sbjct: 90 SAAKRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVI 147
Query: 104 MVSAKEEPDSSLPPAIDGLLRVHKRVI--DGLENDSTHASSGVVAKVSTKLLVPASQAGS 161
++S+K+ D + A L ++ ++ D D++ ++G VA + +LL+ SQAG
Sbjct: 148 IISSKDN-DEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGG 206
Query: 162 LIGKQGGTVKSIQEASNCIVRVLGAEDLP--SFALQDDRVVEVLGDPTGVHKAVELIVSH 219
LIG G ++ ++ +S ++ VL LP + A + DRVV++ GD + V KA+E I
Sbjct: 207 LIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQ 266
Query: 220 LRK 222
LR+
Sbjct: 267 LRE 269
>Medtr7g080630.1 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 379
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 107/183 (58%), Gaps = 7/183 (3%)
Query: 44 AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
+A K+ G + +FR++VP+ ++G +IG++G I+KI E TRA +KI D ER +
Sbjct: 90 SAAKRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVI 147
Query: 104 MVSAKEEPDSSLPPAIDGLLRVHKRVI--DGLENDSTHASSGVVAKVSTKLLVPASQAGS 161
++S+K+ D + A L ++ ++ D D++ ++G VA + +LL+ SQAG
Sbjct: 148 IISSKDN-DEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGG 206
Query: 162 LIGKQGGTVKSIQEASNCIVRVLGAEDLP--SFALQDDRVVEVLGDPTGVHKAVELIVSH 219
LIG G ++ ++ +S ++ VL LP + A + DRVV++ GD + V KA+E I
Sbjct: 207 LIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQ 266
Query: 220 LRK 222
LR+
Sbjct: 267 LRE 269
>Medtr7g080630.2 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707393 | 20130731
Length = 379
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 107/183 (58%), Gaps = 7/183 (3%)
Query: 44 AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
+A K+ G + +FR++VP+ ++G +IG++G I+KI E TRA +KI D ER +
Sbjct: 90 SAAKRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVI 147
Query: 104 MVSAKEEPDSSLPPAIDGLLRVHKRVI--DGLENDSTHASSGVVAKVSTKLLVPASQAGS 161
++S+K+ D + A L ++ ++ D D++ ++G VA + +LL+ SQAG
Sbjct: 148 IISSKDN-DEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGG 206
Query: 162 LIGKQGGTVKSIQEASNCIVRVLGAEDLP--SFALQDDRVVEVLGDPTGVHKAVELIVSH 219
LIG G ++ ++ +S ++ VL LP + A + DRVV++ GD + V KA+E I
Sbjct: 207 LIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQ 266
Query: 220 LRK 222
LR+
Sbjct: 267 LRE 269
>Medtr7g080630.3 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 312
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 107/183 (58%), Gaps = 7/183 (3%)
Query: 44 AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
+A K+ G + +FR++VP+ ++G +IG++G I+KI E TRA +KI D ER +
Sbjct: 90 SAAKRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVI 147
Query: 104 MVSAKEEPDSSLPPAIDGLLRVHKRVI--DGLENDSTHASSGVVAKVSTKLLVPASQAGS 161
++S+K+ D + A L ++ ++ D D++ ++G VA + +LL+ SQAG
Sbjct: 148 IISSKDN-DEMVTDAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGG 206
Query: 162 LIGKQGGTVKSIQEASNCIVRVLGAEDLP--SFALQDDRVVEVLGDPTGVHKAVELIVSH 219
LIG G ++ ++ +S ++ VL LP + A + DRVV++ GD + V KA+E I
Sbjct: 207 LIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQ 266
Query: 220 LRK 222
LR+
Sbjct: 267 LRE 269
>Medtr2g019090.1 | RNA-binding KH domain protein | HC |
chr2:6163835-6158039 | 20130731
Length = 631
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 154/348 (44%), Gaps = 33/348 (9%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E + RML P+ K+G +IG+ G IK++ + + AR+++ D E + ++A E
Sbjct: 311 ELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDL 370
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
A++ +L + +++ D E+D A VS +LLVP+ G +IG+ G + I+
Sbjct: 371 KSVAVEAVLLLQEKIND--EDD---------APVSIRLLVPSKVIGCIIGRSGAIINEIR 419
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDRGVIPIFE 234
+ + +++ + P +A +D +VEV+G+ V A+ I V+ + E
Sbjct: 420 KRTKADIQI-SRSNKPKYADDNDELVEVVGEVDCVRDALIQI------------VLRLRE 466
Query: 235 MNMQTANSHHVEHMPPHQSWXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHDNYYPPAEMP 294
++ + H H+ + +D
Sbjct: 467 DVLKNKDIDHNRHIGSESLYASSSVLSAPPMLSSIPATAPALA------YDQRTGSGTGL 520
Query: 295 PPVDRQPHYGISAYG-RDASVGVHAS--SNTQSAPSIVTQITQQMQIPLSYADAVIGTAG 351
+ HYG +Y D G +S +N + T +M +P + V+G G
Sbjct: 521 GMHSSRSHYGYDSYSMEDNGYGSMSSYATNLYEGHRLPPLSTLEMVVPANAVGKVMGKGG 580
Query: 352 ASISYIRRASGATVAIQETRGVPGEMTVEISGTAAQVQTAQQLIQNFM 399
A+++ IR+ SGATV I E++ G+ ISGT+ + + A+ LIQ F+
Sbjct: 581 ANLANIRKISGATVEISESKSYRGDRVALISGTSEEKRAAENLIQAFI 628
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 27/186 (14%)
Query: 58 FRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMV------------ 105
+R+L P +G +IG+ G+ I I +E+RA+VK++D PG R + +
Sbjct: 44 YRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEIEI 103
Query: 106 ---SAKEEPDSSLPPAIDGLLRVHKRVIDGLEN--DSTHASSGVVAKVSTKLLVPASQAG 160
E+P L A D L++VH + + +E DS K ++LVP+SQ+
Sbjct: 104 EDEFDNEKP---LCAAQDALIKVHSAISNSIETAGDSEKKRKN---KDECQILVPSSQSA 157
Query: 161 SLIGKQGGTVKSIQEASNCIVRVL---GAEDLPSFALQDDRVVEVLGDPTGVHKAVELIV 217
LIGK G T+K ++ + ++V+ A+ S A++ D V ++G+ V +A+ +
Sbjct: 158 ILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFV-LVGESEAVKRALFAVS 216
Query: 218 SHLRKF 223
+ + KF
Sbjct: 217 TIMYKF 222
>Medtr4g093650.1 | RNA-binding KH domain protein | HC |
chr4:37099130-37092340 | 20130731
Length = 616
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 9/172 (5%)
Query: 54 GESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPER--AVMVSAKEEP 111
G VFR+L A ++G IG+ G IK + + T AR++I D P PER V+V+ +
Sbjct: 18 GHVVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNLNGDG 77
Query: 112 DSSLPPAIDGLLRVHKRVID--GLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGT 169
D SL P + LL+V +R++D E+D V VS +LLV A QAG +IGK G
Sbjct: 78 DVSLNPQ-EALLKVFERILDVAAAESDGNGVGDRV---VSCRLLVNAGQAGGVIGKGGMV 133
Query: 170 VKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLR 221
V I+ + C +RVL + LP+ D ++E+ G + V KA+ + L+
Sbjct: 134 VAKIRADTGCRIRVLN-DKLPACTKPSDEIIEIQGIASSVKKALVAVAGRLQ 184
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 6/175 (3%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPP--GTPERAVMVSAKEEPD 112
E FR+L ++G ++G+ G +K + ET A + + GPP +R + ++A E P+
Sbjct: 265 EVTFRILCSGDRIGAVLGKGGSIVKALQNETGANISV--GPPVVECEDRLITITALENPE 322
Query: 113 SSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKS 172
S PA + ++ V R I+ S + V+ +L+VP++Q G L+GK G V
Sbjct: 323 SRFSPAQEAVVLVFCRSIECCIEKVVDWRSNKESSVTAQLVVPSNQVGVLLGKGGAIVSE 382
Query: 173 IQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRK--FLV 225
+++A+ +R+ ++P A +D+VV++ G+ V A+ LR FL+
Sbjct: 383 MRKATWTSIRITRNGEVPKCASFNDQVVQISGELPNVRDALYNATRRLRDHIFLI 437
>Medtr4g008080.1 | RNA-binding KH domain protein | HC |
chr4:1379696-1384039 | 20130731
Length = 605
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 95/172 (55%), Gaps = 11/172 (6%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E V++ML KVG +IG+ G ++ + ET A ++I+D P + ER V++SA E D
Sbjct: 226 EVVYKMLCQQDKVGSLIGKGGSVVRALQNETGASIQIVDAGPDSDERVVVISALENSDQK 285
Query: 115 LPPAIDGLLRVHKRVID-GLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSI 173
PA D ++RVH R+ + G E+ S+ VVA +LLV + Q G L+GK G + +
Sbjct: 286 HSPAQDAVIRVHGRLTEIGFEH-----SNAVVA----RLLVRSPQVGCLLGKGGHVISEM 336
Query: 174 QEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLV 225
+ + +R+ E + + ++ VV+V+G V A+ I S +R+ ++
Sbjct: 337 RRVTGANIRIFSKEQI-KYISHNEEVVQVIGTLQSVQDALFHITSRIRETII 387
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
++VFR+L PA K ++ G+ +K ++++ V D ER V++ + +S+
Sbjct: 17 DTVFRILCPAAKSDSLLSLSGDGVKILIDDFAGDVTSSD------ERIVVIISAAAEESA 70
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
A L+RV +R+++ ++++ + + V +LL P+ Q G ++G+ G V+ I+
Sbjct: 71 AQLA---LIRVFERIVE--KDNNEENNKKSNSSVGCRLLAPSYQVGCVLGRGGKIVEKIR 125
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFLVDRG 228
+ S VR+L + P D +++ G+ V KA+ + S L+ + + G
Sbjct: 126 QESGAQVRILPKDHSP-IPPPGDEFIQITGNFNAVKKALLAVSSCLQDNVGNSG 178
>Medtr2g009650.1 | RNA-binding KH domain protein | HC |
chr2:2001720-2009761 | 20130731
Length = 766
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 39/216 (18%)
Query: 54 GESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDS 113
G FR+L + ++GG+IG+ G IK + T A+++I D P +P+R +MV D
Sbjct: 46 GHVAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDG 105
Query: 114 S--------------LPPAIDGLLRVHKRVI------DGLE-NDSTHASSGVVAKVSTKL 152
+ A + LLRV R++ +G+E D T VS +L
Sbjct: 106 KVMVRSHSGDGEAIEVSKAQEALLRVFDRILEVAAEMEGIELGDRT---------VSCRL 156
Query: 153 LVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKA 212
+ ++QAGS+IGK G V+ I++ + C + V ++LP+ D V+E+ G + V KA
Sbjct: 157 VADSAQAGSVIGKGGKVVEKIKKDTGCKIWVC-KDNLPACISSPDEVIEIEGSVSSVKKA 215
Query: 213 VELIVSHLR-KFLVDRGVIPIFEMNMQTANSHHVEH 247
+ + +L+ + DR M NSH V H
Sbjct: 216 LVAVSRNLQDRHHADR-------TKMTGQNSHEVIH 244
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 86/170 (50%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E F+++ ++GG+IG+ G I+ + ET A V + +R + ++A E P+S
Sbjct: 330 EITFKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITASESPESR 389
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
PA + V R ++ + + V+ +L+V ++Q G L+GK G V ++
Sbjct: 390 YSPAQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVGCLLGKGGVIVSEMR 449
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFL 224
+A+ +R++G + + A +D+VV++ G+ + V A+ LR L
Sbjct: 450 KATGASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDNL 499
>Medtr5g031720.1 | RNA-binding KH domain protein | HC |
chr5:13608841-13602499 | 20130731
Length = 596
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 147/357 (41%), Gaps = 56/357 (15%)
Query: 57 VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPP--GTPERAVMVSAKEEPDSS 114
VFR+L + G +IG+KG ++ E R I+ PP ER V +SA E +SS
Sbjct: 276 VFRLLCSNNVAGSVIGKKGSIVRTF--EIRTGASIVFAPPLGQYEERIVTISAFENLESS 333
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
PA D ++ V R+ + + ++ V + V+ +LL+ S L G +G + ++
Sbjct: 334 NSPAQDAVILVFTRIAEDHIRNGFQPATAVESPVTARLLITTSTLHLLTGNEGQVISELR 393
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLR------KFLVDRG 228
+ S +++L E +P+ A +D VV++ G V A+ I S +R + L +
Sbjct: 394 QVSGADIQLLHGEPIPN-ASDNDVVVQITGGYRCVENALRKITSIIRDNPLTNELLAEAK 452
Query: 229 VIPIFEMNMQTANSHHVEHMPPHQSWXXXXXXXXXXXXXXXXXXXXXXXXXXXRQHDNYY 288
+ P F +N T S + + + +
Sbjct: 453 IKPSFPLNKDTVRSKFIT------------------------------------RKKSSF 476
Query: 289 PPAEMPPPVDRQPHYGISAYGRDASVGVHASSNTQ----SAPSIVTQITQQMQIPLSYAD 344
P A +PP Y + + N + + + VT T ++ +
Sbjct: 477 PFARVPP--QNAGVYQAKKVTENGESHTNLIENVEPGRGNIVATVTNTTVEIIVSEHVFG 534
Query: 345 AVIGTAGASISYIRRASGATVAIQE--TRGVPGEMTVEISGTAAQVQTAQQLIQNFM 399
+V G G ++ IR+ SGA V + + + G G V ISGT Q AQ L+Q F+
Sbjct: 535 SVYGEDGGNLDRIRQISGADVTVFDPSSTGTSGGKVV-ISGTPDQTFAAQSLLQAFI 590
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 25/230 (10%)
Query: 41 PIAAAEKKWPGW---PGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPG 97
P+ +K P + PG+ FR++ + VGG+IG G + ++ ET ++ D G
Sbjct: 21 PLKRNNRKRPVFKLLPGQIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVG 80
Query: 98 TPERAVMVSAKE---------EPDSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKV 148
T +R ++V + + + A +G++RV RV GLE++ G +V
Sbjct: 81 TDDRVILVIGSMSDRKGIVLGDREMEVSNAQEGVVRVFDRVW-GLESE-----KGGNGEV 134
Query: 149 STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTG 208
KLL +SQ G+++GK G + +I+ S +RV A P A +D+ ++ + G+
Sbjct: 135 YGKLLAHSSQVGAIVGKGGKNISNIRNNSGSNIRVCPA---PHCAAKDEELILITGESLA 191
Query: 209 VHKAVELIVSHLRKF----LVDRGVIPIFEMNMQTANSHHVEHMPPHQSW 254
V KA+ + L+ V P + ++ + H + P SW
Sbjct: 192 VKKALIYVSYCLQDCPPMGKVSLNTPPTINSSDRSTSYTHEDLFPHLNSW 241
>Medtr3g091800.1 | RNA-binding KH domain protein | HC |
chr3:41793839-41789438 | 20130731
Length = 646
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 58 FRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVS--AKEEPDSSL 115
+R+L + GG+IG+ G IK I + T A + + + G ER + +S + +PD +
Sbjct: 65 YRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEISDTRRRDPDGRM 124
Query: 116 P---PAIDGLLRVHKRVID---GLEN--DSTHASSGVVAKVSTKLLVPASQAGSLIGKQG 167
P PA + LL +H+R+++ G E+ D G +VS++L+V GSL+GK G
Sbjct: 125 PQFSPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSLLGKGG 184
Query: 168 GTVKSIQEASNCIVRVLGAED-LPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRK 222
++ ++ + +R+L + LP + +V+V GD V A +I S LR+
Sbjct: 185 KIIEQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVISSRLRE 240
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 89/168 (52%), Gaps = 12/168 (7%)
Query: 57 VFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSSLP 116
+FR+L P +V I+G G ++ + + V+I D G+ E+ V+++++E P+ ++
Sbjct: 332 IFRILCPVDRVDRIVGESGGILELLQDRVGVDVQISDRVGGSDEQMVIITSEEGPNDTMF 391
Query: 117 PAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 176
PA + LL + ++D +DS ++T+L+VP+S L GK ++ I+ +
Sbjct: 392 PAQEALLHIQTHIVDL--SDSI---------ITTRLIVPSSDIECLDGK-NASLSEIERS 439
Query: 177 SNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRKFL 224
+ V++L E+LP D +V+++G+ + + + LR ++
Sbjct: 440 TGASVQILPREELPPCIANTDELVQIVGEIEAARNVILDVTAKLRSYV 487
>Medtr2g019090.2 | RNA-binding KH domain protein | HC |
chr2:6163891-6155394 | 20130731
Length = 628
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 26/186 (13%)
Query: 58 FRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSA---------- 107
+R+L P +G +IG+ G+ I I +E+RA+VK++D PG R + +
Sbjct: 44 YRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEIEI 103
Query: 108 -----KEEPDSSLPPAIDGLLRVHKRVIDGLEN--DSTHASSGVVAKVSTKLLVPASQAG 160
E+P L A D L++VH + + +E DS K ++LVP+SQ+
Sbjct: 104 EDEFDNEKP---LCAAQDALIKVHSAISNSIETAGDSEKKRKN---KDECQILVPSSQSA 157
Query: 161 SLIGKQGGTVKSIQEASNCIVRVL---GAEDLPSFALQDDRVVEVLGDPTGVHKAVELIV 217
LIGK G T+K ++ + ++V+ A+ S A++ D V + G+ V +A+ +
Sbjct: 158 ILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLITGESEAVKRALFAVS 217
Query: 218 SHLRKF 223
+ + KF
Sbjct: 218 TIMYKF 223
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 90/168 (53%), Gaps = 12/168 (7%)
Query: 55 ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVMVSAKEEPDSS 114
E + RML P+ K+G +IG+ G IK++ + + AR+++ D E + ++A E
Sbjct: 312 ELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDL 371
Query: 115 LPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
A++ +L + +++ D E+D A VS +LLVP+ G +IG+ G + I+
Sbjct: 372 KSVAVEAVLLLQEKIND--EDD---------APVSIRLLVPSKVIGCIIGRSGAIINEIR 420
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHLRK 222
+ + +++ + P +A +D +VEV+G+ V A+ IV LR+
Sbjct: 421 KRTKADIQI-SRSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLRE 467
>Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 59 RMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGP---PGTPERAVMVSAKEEPDSSL 115
R LV G +IG+ G I ++ AR+++ PGT +R +MVS
Sbjct: 39 RFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSG-------- 90
Query: 116 PPAIDGLLRVHKRVIDGLEND-STHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
AI+ +LR + ++ L ++ + + V K +L+VP G +IGK G T++S
Sbjct: 91 --AINEVLRAVELILSKLLSELHSEDDNDVEPKTKVRLIVPNGSCGGIIGKGGATIRSFI 148
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
E S +++ ++ S+ Q+DR+V V G + ++LIVS L
Sbjct: 149 EESQAGIKISPQDN--SYYGQNDRIVTVTGTLDEQMRGIDLIVSKL 192
>Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 59 RMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGP---PGTPERAVMVSAKEEPDSSL 115
R LV G +IG+ G I ++ AR+++ PGT +R +MVS
Sbjct: 39 RFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSG-------- 90
Query: 116 PPAIDGLLRVHKRVIDGLEND-STHASSGVVAKVSTKLLVPASQAGSLIGKQGGTVKSIQ 174
AI+ +LR + ++ L ++ + + V K +L+VP G +IGK G T++S
Sbjct: 91 --AINEVLRAVELILSKLLSELHSEDDNDVEPKTKVRLIVPNGSCGGIIGKGGATIRSFI 148
Query: 175 EASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
E S +++ ++ S+ Q+DR+V V G + ++LIVS L
Sbjct: 149 EESQAGIKISPQDN--SYYGQNDRIVTVTGTLDEQMRGIDLIVSKL 192
>Medtr4g116880.1 | poly(RC)-binding protein, putative | HC |
chr4:48399302-48398934 | 20130731
Length = 71
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 44/78 (56%), Gaps = 23/78 (29%)
Query: 103 VMVSAKEEPDSSLPPAIDGLLRVHKRVIDGLENDSTHASSGVVAKVSTKLLVPASQAGSL 162
VM+ A++EP SS PPA HKR I GL+ S VPASQ GSL
Sbjct: 10 VMILAEDEPGSSFPPA-------HKRSIHGLDAPSR---------------VPASQVGSL 47
Query: 163 IGKQGGTVKSIQEASNCI 180
I KQGGT+KSIQ ASN +
Sbjct: 48 IWKQGGTIKSIQ-ASNLL 64
>Medtr1g016760.1 | RNA-binding KH domain protein | HC |
chr1:4457792-4464676 | 20130731
Length = 627
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 56 SVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKI---LDGPPGTPERAVMVSAKEEPD 112
S ++ +P +VG IIG+ GE IK + ++ A++++ +D P +P R V ++ +
Sbjct: 112 SSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSD-- 169
Query: 113 SSLPPAIDGLLRVHKRVIDGLENDS----THASSGVVAKVSTKLLVPASQAGSLIGKQGG 168
AI ++ K V+ E+ T +G + +P ++ G +IGK G
Sbjct: 170 -----AIATAEKLIKEVLAEAESGGNGLVTRRMTGQGGADEFSMKIPNNKVGLIIGKGGE 224
Query: 169 TVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELIVSHL 220
T+KS+Q + ++V+ LP +R +++ G + A +L+ S L
Sbjct: 225 TIKSMQATTGARIQVI-PLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSIL 275
>Medtr5g008420.1 | RNA-binding KH domain protein | HC |
chr5:1773973-1764791 | 20130731
Length = 780
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 19/172 (11%)
Query: 56 SVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKIL---DGPPGTPERAVMVSAKEEPD 112
+ ++ VP++KVG +IG+ G+ I+ + + A+++I D P + R V + E
Sbjct: 185 TTRKIEVPSNKVGVLIGKSGDTIRYLQYNSGAKIQITRDADADPHSSTRPVELIGTLE-- 242
Query: 113 SSLPPAIDGLLRVHKRVIDGLENDSTHA--------SSGVVAKVSTKLLVPASQAGSLIG 164
+ID ++ VI + + A + +V ++ VP + G +IG
Sbjct: 243 -----SIDKAEKLMNAVIAEADAGGSPALVARGLSPAQAIVGSDQIQIQVPNEKVGLIIG 297
Query: 165 KQGGTVKSIQEASNCIVRVLGAEDLPSFALQDDRVVEVLGDPTGVHKAVELI 216
K G T+KS+Q + ++++ + LP +R V+V GD + A E+I
Sbjct: 298 KGGETIKSLQTKTGARIQLI-PQHLPEGDDSKERTVQVTGDKRQIEIAQEMI 348