Miyakogusa Predicted Gene

Lj1g3v4995150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4995150.1 Non Characterized Hit- tr|K3Z5F8|K3Z5F8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si021776,61.43,3e-19,Eukaryotic type KH-domain (KH-domain type
I),NULL; no description,NULL; KH_1,K Homology domain,
type,CUFF.33905.1
         (132 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764...   137   4e-33
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764...   136   5e-33
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114...   107   3e-24
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114...   107   3e-24
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114...   107   3e-24
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286...    92   2e-19
Medtr2g038020.1 | poly(rC)-binding-like protein | HC | chr2:1650...    87   4e-18
Medtr6g012630.3 | RNA-binding KH domain protein | HC | chr6:3864...    52   2e-07
Medtr6g012630.1 | RNA-binding KH domain protein | HC | chr6:3864...    51   2e-07
Medtr6g012630.5 | RNA-binding KH domain protein | HC | chr6:3864...    51   2e-07
Medtr6g012630.4 | RNA-binding KH domain protein | HC | chr6:3864...    51   2e-07
Medtr6g012630.2 | RNA-binding KH domain protein | HC | chr6:3864...    51   2e-07
Medtr7g011080.2 | RNA-binding KH domain protein | HC | chr7:2893...    49   9e-07
Medtr7g011080.1 | RNA-binding KH domain protein | HC | chr7:2893...    49   9e-07
Medtr7g080630.4 | poly(rC)-binding-like protein | HC | chr7:3070...    47   4e-06
Medtr7g080630.1 | poly(rC)-binding-like protein | HC | chr7:3070...    47   4e-06
Medtr7g080630.2 | poly(rC)-binding-like protein | HC | chr7:3070...    47   4e-06
Medtr7g080630.3 | poly(rC)-binding-like protein | HC | chr7:3070...    47   4e-06
Medtr7g080630.5 | poly(rC)-binding-like protein | HC | chr7:3070...    47   4e-06
Medtr4g093650.1 | RNA-binding KH domain protein | HC | chr4:3709...    47   4e-06

>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
           chr7:47649189-47656173 | 20130731
          Length = 510

 Score =  137 bits (344), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 75/106 (70%), Gaps = 9/106 (8%)

Query: 1   MAEVDQNTGEFEAEQVIENSELPXXXXXXXXXXXXXXXXRPIAAAEKKWPGWPGESVFRM 60
           MAEVDQN GEFE +Q I  +E                   PI   EKKWPGWPGESVFRM
Sbjct: 69  MAEVDQNAGEFEEQQKIVETE---------QNESEKVVEVPIVEPEKKWPGWPGESVFRM 119

Query: 61  LVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVQCS 106
           LVPA KVGGIIGRKGEFIKKIVEETRARVKILDGPPGT ERAV  S
Sbjct: 120 LVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVS 165


>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
           chr7:47649475-47656173 | 20130731
          Length = 442

 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 75/106 (70%), Gaps = 9/106 (8%)

Query: 1   MAEVDQNTGEFEAEQVIENSELPXXXXXXXXXXXXXXXXRPIAAAEKKWPGWPGESVFRM 60
           MAEVDQN GEFE +Q I  +E                   PI   EKKWPGWPGESVFRM
Sbjct: 1   MAEVDQNAGEFEEQQKIVETE---------QNESEKVVEVPIVEPEKKWPGWPGESVFRM 51

Query: 61  LVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVQCS 106
           LVPA KVGGIIGRKGEFIKKIVEETRARVKILDGPPGT ERAV  S
Sbjct: 52  LVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVS 97


>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
           chr1:31149691-31143604 | 20130731
          Length = 567

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 52/60 (86%)

Query: 47  KKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVQCS 106
           KKW GWPGE+VFRMLVPA KVG IIGRKGEFIKKI EETRARVKILDGP GT ERAV  S
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVS 215


>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
           chr1:31149687-31143883 | 20130731
          Length = 568

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 52/60 (86%)

Query: 47  KKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVQCS 106
           KKW GWPGE+VFRMLVPA KVG IIGRKGEFIKKI EETRARVKILDGP GT ERAV  S
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVS 215


>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
           chr1:31149683-31143883 | 20130731
          Length = 568

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 52/60 (86%)

Query: 47  KKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAVQCS 106
           KKW GWPGE+VFRMLVPA KVG IIGRKGEFIKKI EETRARVKILDGP GT ERAV  S
Sbjct: 156 KKWYGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVS 215


>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
           chr4:52864244-52858917 | 20130731
          Length = 431

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/64 (62%), Positives = 49/64 (76%)

Query: 43  AAAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERA 102
           + +EK+WPGWPG  VFR++VP  KVG IIGRKGE IKK  EET AR+++LD P GTP+R 
Sbjct: 31  SESEKRWPGWPGHCVFRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRI 90

Query: 103 VQCS 106
           V  S
Sbjct: 91  VLIS 94


>Medtr2g038020.1 | poly(rC)-binding-like protein | HC |
           chr2:16509240-16516412 | 20130731
          Length = 470

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 50/65 (76%)

Query: 42  IAAAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPER 101
           +   E++WPGWPG+ VFR++VP  KVGGIIGRKG+ IKK+ +ET+ARV++LD   G P+R
Sbjct: 56  VTPPEQRWPGWPGDCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDR 115

Query: 102 AVQCS 106
            +  S
Sbjct: 116 IILIS 120


>Medtr6g012630.3 | RNA-binding KH domain protein | HC |
           chr6:3864952-3867231 | 20130731
          Length = 451

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           ++VFR L P  K+G IIGR GE +K++  ET+A+++I +  PG  ER V
Sbjct: 46  DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVV 94


>Medtr6g012630.1 | RNA-binding KH domain protein | HC |
           chr6:3864952-3868465 | 20130731
          Length = 553

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           ++VFR L P  K+G IIGR GE +K++  ET+A+++I +  PG  ER V
Sbjct: 46  DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVV 94


>Medtr6g012630.5 | RNA-binding KH domain protein | HC |
           chr6:3864952-3868465 | 20130731
          Length = 553

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           ++VFR L P  K+G IIGR GE +K++  ET+A+++I +  PG  ER V
Sbjct: 46  DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVV 94


>Medtr6g012630.4 | RNA-binding KH domain protein | HC |
           chr6:3864952-3867538 | 20130731
          Length = 538

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           ++VFR L P  K+G IIGR GE +K++  ET+A+++I +  PG  ER V
Sbjct: 46  DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVV 94


>Medtr6g012630.2 | RNA-binding KH domain protein | HC |
           chr6:3864952-3868465 | 20130731
          Length = 553

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           ++VFR L P  K+G IIGR GE +K++  ET+A+++I +  PG  ER V
Sbjct: 46  DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVV 94


>Medtr7g011080.2 | RNA-binding KH domain protein | HC |
           chr7:2893165-2900092 | 20130731
          Length = 571

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           ++V+R L P  K+G IIGR GE +K++  +T+A+++I +  PG  ER V
Sbjct: 48  DTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVV 96


>Medtr7g011080.1 | RNA-binding KH domain protein | HC |
           chr7:2893165-2900092 | 20130731
          Length = 571

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 55  ESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           ++V+R L P  K+G IIGR GE +K++  +T+A+++I +  PG  ER V
Sbjct: 48  DTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVV 96


>Medtr7g080630.4 | poly(rC)-binding-like protein | HC |
           chr7:30700618-30707328 | 20130731
          Length = 379

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 44  AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           +A K+  G   + +FR++VP+ ++G +IG++G  I+KI E TRA +KI D      ER +
Sbjct: 90  SAAKRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVI 147

Query: 104 QCSNFKGNDSIIN 116
             S+ K ND ++ 
Sbjct: 148 IISS-KDNDEMVT 159


>Medtr7g080630.1 | poly(rC)-binding-like protein | HC |
           chr7:30700618-30706480 | 20130731
          Length = 379

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 44  AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           +A K+  G   + +FR++VP+ ++G +IG++G  I+KI E TRA +KI D      ER +
Sbjct: 90  SAAKRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVI 147

Query: 104 QCSNFKGNDSIIN 116
             S+ K ND ++ 
Sbjct: 148 IISS-KDNDEMVT 159


>Medtr7g080630.2 | poly(rC)-binding-like protein | HC |
           chr7:30700618-30707393 | 20130731
          Length = 379

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 44  AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           +A K+  G   + +FR++VP+ ++G +IG++G  I+KI E TRA +KI D      ER +
Sbjct: 90  SAAKRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVI 147

Query: 104 QCSNFKGNDSIIN 116
             S+ K ND ++ 
Sbjct: 148 IISS-KDNDEMVT 159


>Medtr7g080630.3 | poly(rC)-binding-like protein | HC |
           chr7:30700618-30706480 | 20130731
          Length = 312

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 44  AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           +A K+  G   + +FR++VP+ ++G +IG++G  I+KI E TRA +KI D      ER +
Sbjct: 90  SAAKRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVI 147

Query: 104 QCSNFKGNDSIIN 116
             S+ K ND ++ 
Sbjct: 148 IISS-KDNDEMVT 159


>Medtr7g080630.5 | poly(rC)-binding-like protein | HC |
           chr7:30700621-30706773 | 20130731
          Length = 306

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 44  AAEKKWPGWPGESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           +A K+  G   + +FR++VP+ ++G +IG++G  I+KI E TRA +KI D      ER +
Sbjct: 90  SAAKRAKGQ--DVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVI 147

Query: 104 QCSNFKGNDSIIN 116
             S+ K ND ++ 
Sbjct: 148 IISS-KDNDEMVT 159


>Medtr4g093650.1 | RNA-binding KH domain protein | HC |
           chr4:37099130-37092340 | 20130731
          Length = 616

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 54  GESVFRMLVPAHKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTPERAV 103
           G  VFR+L  A ++G  IG+ G  IK + + T AR++I D P   PER +
Sbjct: 18  GHVVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVI 67