Miyakogusa Predicted Gene

Lj1g3v4984110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4984110.1 Non Characterized Hit- tr|I1M0W6|I1M0W6_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,45.08,8e-17,seg,NULL,CUFF.33765.1
         (248 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g037345.1 | chromatin remodeling complex subunit | HC | ch...   197   9e-51
Medtr2g437480.1 | chromatin remodeling complex subunit | HC | ch...   159   2e-39

>Medtr8g037345.1 | chromatin remodeling complex subunit | HC |
           chr8:13958611-13951546 | 20130731
          Length = 929

 Score =  197 bits (501), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 121/260 (46%), Positives = 154/260 (59%), Gaps = 48/260 (18%)

Query: 19  SPQGHKRLKLSSDSLPYSAHDKAVPEAPTNVEDFSNPFAISDFLNRLESGKFGSVTKDIE 78
           S +G K+LKLSSD LP S   K V        D+SNP+AI++ LN LE G++GSVTKDI+
Sbjct: 21  SEEGCKKLKLSSDGLPCSVQAKVV--------DYSNPYAITEVLNSLEGGEYGSVTKDID 72

Query: 79  ALITRKMQVLGPFFAKFPKLVTQSLKVVVNHDEESNKLENKKGTIMSHDKVVDLEEEHTK 138
           ALITRKMQVLGP+FAK+P L+ + LKVV   DE+S+          S   V+DL+E   +
Sbjct: 73  ALITRKMQVLGPYFAKYPTLIDRFLKVVTVQDEKSHH---------SDQNVIDLDEGQIQ 123

Query: 139 KDASAAQ----------PVVIIDSDEEDDRDKNSSLPFNEEMIPNSLQSPALRKMGYRAP 188
           +D +A +          PVVIIDSDEEDDRD+ S   ++E ++P   QSPAL+ +GY  P
Sbjct: 124 RDVAAPKREKDVPAAQCPVVIIDSDEEDDRDQKSFHAYHEVVLPKR-QSPALKMIGYHPP 182

Query: 189 IAYHGESEDLKFE---PTRAA---------------KDKTQRDKGVYVGVQXXXXXXXXX 230
            AY+GES DLKFE   P  A                KD  ++DKGVY+GVQ         
Sbjct: 183 NAYNGESSDLKFETSLPLNAYYGESADKKIEKKLPPKDNPRKDKGVYLGVQEEEDNAVDA 242

Query: 231 X--XXXXIWREMSMAVECSK 248
                  IWREMSMA+E SK
Sbjct: 243 EDDGLEDIWREMSMAIETSK 262


>Medtr2g437480.1 | chromatin remodeling complex subunit | HC |
           chr2:14725811-14732214 | 20130731
          Length = 1042

 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 112/160 (70%), Gaps = 20/160 (12%)

Query: 11  KRPASSGISPQ-GHKRLKLSSDSLPYSAHDKAVPEAPTNVEDFSNPFAISDFLNRLESGK 69
           KRPA +GI P+ G K+LKLSSDSLP   H   V        D+S+P+AIS+ +NRLESGK
Sbjct: 6   KRPAPTGILPEEGRKKLKLSSDSLPCLTHGDVV--------DYSSPYAISNVINRLESGK 57

Query: 70  FGSVTKDIEALITRKMQVLGPFFAKFPKLVTQSLKVVVNHDEESNKLENKKGTIMSHDKV 129
           FGSVTK+IE LIT+KMQ+LGP+FAK P+LV Q L+VV +HDEE+  +ENK    + HD V
Sbjct: 58  FGSVTKNIEDLITQKMQILGPYFAKCPRLVNQLLRVVTDHDEETPNMENKNVNGLQHDNV 117

Query: 130 VDLEE--EHTKKDASA--------AQPVVIIDSDEEDDRD 159
           +DL+   EHT+KD  A        A P  IIDSDEEDD+D
Sbjct: 118 IDLDSDGEHTEKDILAPKRGYNVTAVP-FIIDSDEEDDKD 156



 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 79/172 (45%), Gaps = 50/172 (29%)

Query: 108 NHDEESNKLENKKGTIMSHDKVVDLEEEHTKKDASAAQPVVIIDSDEEDDRDKNSSLPFN 167
           NHDEE+  +EN+K T MS   V                   IIDS+ EDDRD+ S LPF+
Sbjct: 263 NHDEETPNMENEKVTGMSCQNV-------------------IIDSNGEDDRDQTSFLPFH 303

Query: 168 EEMIPNSLQSPALRKMGYRAPIAYHGESEDLKFEPTRAAKDKTQRDKGVYVGVQXXXXXX 227
           E  +P  +QSPAL  +GY  P AYHGE  DLKFE +   KD +++DKG YVGV       
Sbjct: 304 EVALPKPVQSPALEMIGYHDPNAYHGEHADLKFETSLLPKDNSKKDKGNYVGVHVEEDNK 363

Query: 228 XXXXXXX-------------------------------XIWREMSMAVECSK 248
                                                  +WREM+MA+E SK
Sbjct: 364 ELETSLSPEDNTKKDKGVYVGVSEEEDNKVDTEDDGLEDVWREMAMAMETSK 415