Miyakogusa Predicted Gene

Lj1g3v4957820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4957820.1 Non Characterized Hit- tr|I1L9R2|I1L9R2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38864 PE,38.54,0.00004,
,CUFF.33743.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g069850.1 | hypothetical protein | LC | chr7:25756191-2575...    49   7e-07
Medtr7g069800.1 | F-box protein | LC | chr7:25733806-25732646 | ...    47   3e-06
Medtr3g058460.1 | F-box SKIP23-like protein | LC | chr3:23206024...    47   5e-06

>Medtr7g069850.1 | hypothetical protein | LC |
           chr7:25756191-25755091 | 20130731
          Length = 366

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 4/121 (3%)

Query: 6   GDQILLVLHHTSRGVTKGFRIFKLDISASK--WIEVHDLGDSVLFMDSAGIQVISAKEIK 63
            D+  ++L +        F +FKLD + S   W  V  L D V+F+      VIS  E+ 
Sbjct: 244 SDRFSIILAYAKPPHVTCFEVFKLDTNKSPIGWQNVR-LDDKVVFLSCCKSMVISRDELN 302

Query: 64  LPRNLSGGNCVFFCIT-NSIKVHPFLKRDLGVFTLKDKRITGFPLSHCIQVSGLRFLWFS 122
               L  GN ++F +T    + +P    + G+F L D  I  FP         L  +WF 
Sbjct: 303 NIEELVRGNSIYFAVTFRCPRYNPSTSLEFGMFCLNDSSIKYFPEKTLKHGDVLHPVWFV 362

Query: 123 P 123
           P
Sbjct: 363 P 363


>Medtr7g069800.1 | F-box protein | LC | chr7:25733806-25732646 |
           20130731
          Length = 386

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 24  FRIFKLDISASK--WIEVHDLGDSVLFMDSAGIQVISAKEIKLPRNLSGGNCVFFCITNS 81
           F +FKLD + S   W  V  L D V F+ +    V+S  E+     L  GN ++F IT  
Sbjct: 281 FEVFKLDTNKSPIGWQNV-KLEDKVAFVSNCKSMVMSRDELNYSEELVRGNSIYFAITFP 339

Query: 82  I-KVHPFLKRDLGVFTLKDKRITGFP 106
             K++P    + G+F L D+ I  FP
Sbjct: 340 CPKINPPTSLEFGIFCLNDRSIKYFP 365


>Medtr3g058460.1 | F-box SKIP23-like protein | LC |
           chr3:23206024-23202653 | 20130731
          Length = 378

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 24  FRIFKLDISASKWIEVHDLGDSVLFMDSAGIQVISAKEIKLPRNLSGGNCVFF 76
           F++F LD    KW+EV +LGD VLF    G+   SA E+     +  GNCV F
Sbjct: 283 FQVFNLDEKEKKWVEVRNLGDRVLFWGEDGVFSASASEL----GVGNGNCVIF 331