Miyakogusa Predicted Gene

Lj1g3v4957670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4957670.1 Non Characterized Hit- tr|I1JRL0|I1JRL0_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,88.15,0,XRN_N,Putative 5-3 exonuclease; zf-CCHC,Zinc finger,
CCHC-type; no description,Zinc finger, CCHC-typ,CUFF.33735.1
         (688 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g114570.1 | 5'-3' exoribonuclease | HC | chr7:47305879-473...  1142   0.0  
Medtr7g114570.2 | 5'-3' exoribonuclease | HC | chr7:47305880-473...  1140   0.0  
Medtr4g051920.1 | 5'-3' exoribonuclease | HC | chr4:18782027-187...   348   9e-96

>Medtr7g114570.1 | 5'-3' exoribonuclease | HC |
           chr7:47305879-47315956 | 20130731
          Length = 956

 Score = 1142 bits (2955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/691 (80%), Positives = 601/691 (86%), Gaps = 5/691 (0%)

Query: 1   MGVPAFYRWLADRYPLSIADVVEEEPS---AAGVPFPVDVSKPNPNGMEFDNLYLDMNGI 57
           MGVPAFYRWLADRYP SI DVVEE PS   A G PFPVDVS+PNPNGMEFDNLYLDMNGI
Sbjct: 1   MGVPAFYRWLADRYPRSIVDVVEEAPSPSVAGGPPFPVDVSRPNPNGMEFDNLYLDMNGI 60

Query: 58  IHPCFHPDGKQAPATYDDVFRSMFDYIDHLFALVRPRKLLYLAIDGVAPRAKMNQQRSXX 117
           IHPCFHPDGK APATYDDVF+SMFDYIDHLF+LVRPRKLLYLAIDGVAPRAKMNQQRS  
Sbjct: 61  IHPCFHPDGKPAPATYDDVFKSMFDYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRR 120

Query: 118 XXXXXXXXXXXXXXXXXXXXFEGEMELLPSLDKPETYDSNVITPGTPFMAVLSVALQYYI 177
                               F  ++ELL S +K ET+DSNVITPGTPFMAVLSVALQYYI
Sbjct: 121 FRAAKDAAEAEAEEERLRNEFADQIELLTSKEKTETHDSNVITPGTPFMAVLSVALQYYI 180

Query: 178 QTRLNNNPGWRHTKVILSDSNVPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIM 237
           QTRLN NPGWR+TKV+LSDSNVPGEGEHKIM+YIRLQRNLPGF+PNTRHCLYGLDADLIM
Sbjct: 181 QTRLNYNPGWRNTKVMLSDSNVPGEGEHKIMDYIRLQRNLPGFDPNTRHCLYGLDADLIM 240

Query: 238 LSLATHEVHFSILREVITLPGQQEKCFQCGQAGHLAAECRGKPGEKAEDWNPVDDTPIHK 297
           LSLATHE+HFSILREVIT PGQQEKC+ CGQ GHLAAECRGKPG+ A DW PVDDTPIHK
Sbjct: 241 LSLATHEIHFSILREVITFPGQQEKCYMCGQVGHLAAECRGKPGDNALDW-PVDDTPIHK 299

Query: 298 KKYQFLNIWVLREYLQYELEIPNPPFEIDFERIIDDFVFMCFFVGNDFLPHMPTLEIREG 357
           KKYQFL+IWVLREYLQYEL IP+PPFEIDFERI+DDFVF+CFFVGNDFLPHMPTLEIREG
Sbjct: 300 KKYQFLHIWVLREYLQYELLIPDPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359

Query: 358 AVNLLMHIYRKEFTSMGGYLTDAGEVSLERVEHFIQAVAIHEDQIFQKRVRIQQATXXXX 417
           AVNLLMHIYRKEFT+MGGYLTDAGEV LERVE+FIQ VA+HE+QIFQKRVRIQQ+     
Sbjct: 360 AVNLLMHIYRKEFTAMGGYLTDAGEVFLERVENFIQCVAVHEEQIFQKRVRIQQSQEFNE 419

Query: 418 XXXXXXXXXXXXXXXXSVLDKVKLDQPGYKERYYVEKFGALELGEIDKIKKDTVLNYVEG 477
                           SV+DKVKL QPGY ERYY EKFGA +  EI++IKKD VL YVEG
Sbjct: 420 GMRARARGEMPEEPRASVVDKVKLGQPGYTERYYAEKFGASD-PEIERIKKDIVLKYVEG 478

Query: 478 LCWVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASS 537
           LCWVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFF+GEPF+PFDQLMGTLP+SS
Sbjct: 479 LCWVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFMGEPFRPFDQLMGTLPSSS 538

Query: 538 SSALPEKYRDLMIDPSSPILQFYPSDFEIDMNGKRFAWQGVAKLPFINEKKLLAATRKLE 597
           SSALPE+YRDLMI+PSSPILQFYPSDFEIDMNGK+++WQGVAKLPFI+EKKLL+ATR LE
Sbjct: 539 SSALPERYRDLMINPSSPILQFYPSDFEIDMNGKKYSWQGVAKLPFIDEKKLLSATRTLE 598

Query: 598 GTLTEEEQLRNSVMLDFLYVSGAHYLAPYILWYYQHYSHLPLHQRPALPIDSNASGGMNG 657
           GTLTEEEQLRNS MLD LYVS AH L P+IL+YYQ+YSHLP  QRP LPID +AS GMNG
Sbjct: 599 GTLTEEEQLRNSKMLDLLYVSRAHKLVPHILFYYQNYSHLPHQQRPVLPIDPSASDGMNG 658

Query: 658 YLWLYERNVLRTVVSSPIKGLQDVERNQVLN 688
           +LW YERNV RTVVSSPIKGLQD+  NQVLN
Sbjct: 659 FLWSYERNVFRTVVSSPIKGLQDIACNQVLN 689


>Medtr7g114570.2 | 5'-3' exoribonuclease | HC |
           chr7:47305880-47315956 | 20130731
          Length = 945

 Score = 1140 bits (2948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/691 (80%), Positives = 601/691 (86%), Gaps = 5/691 (0%)

Query: 1   MGVPAFYRWLADRYPLSIADVVEEEPS---AAGVPFPVDVSKPNPNGMEFDNLYLDMNGI 57
           MGVPAFYRWLADRYP SI DVVEE PS   A G PFPVDVS+PNPNGMEFDNLYLDMNGI
Sbjct: 1   MGVPAFYRWLADRYPRSIVDVVEEAPSPSVAGGPPFPVDVSRPNPNGMEFDNLYLDMNGI 60

Query: 58  IHPCFHPDGKQAPATYDDVFRSMFDYIDHLFALVRPRKLLYLAIDGVAPRAKMNQQRSXX 117
           IHPCFHPDGK APATYDDVF+SMFDYIDHLF+LVRPRKLLYLAIDGVAPRAKMNQQRS  
Sbjct: 61  IHPCFHPDGKPAPATYDDVFKSMFDYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRR 120

Query: 118 XXXXXXXXXXXXXXXXXXXXFEGEMELLPSLDKPETYDSNVITPGTPFMAVLSVALQYYI 177
                               F  ++ELL S +K ET+DSNVITPGTPFMAVLSVALQYYI
Sbjct: 121 FRAAKDAAEAEAEEERLRNEFADQIELLTSKEKTETHDSNVITPGTPFMAVLSVALQYYI 180

Query: 178 QTRLNNNPGWRHTKVILSDSNVPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDADLIM 237
           QTRLN NPGWR+TKV+LSDSNVPGEGEHKIM+YIRLQRNLPGF+PNTRHCLYGLDADLIM
Sbjct: 181 QTRLNYNPGWRNTKVMLSDSNVPGEGEHKIMDYIRLQRNLPGFDPNTRHCLYGLDADLIM 240

Query: 238 LSLATHEVHFSILREVITLPGQQEKCFQCGQAGHLAAECRGKPGEKAEDWNPVDDTPIHK 297
           LSLATHE+HFSILREVIT PGQQEKC+ CGQ GHLAAECRGKPG+ A DW PVDDTPIHK
Sbjct: 241 LSLATHEIHFSILREVITFPGQQEKCYMCGQVGHLAAECRGKPGDNALDW-PVDDTPIHK 299

Query: 298 KKYQFLNIWVLREYLQYELEIPNPPFEIDFERIIDDFVFMCFFVGNDFLPHMPTLEIREG 357
           KKYQFL+IWVLREYLQYEL IP+PPFEIDFERI+DDFVF+CFFVGNDFLPHMPTLEIREG
Sbjct: 300 KKYQFLHIWVLREYLQYELLIPDPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359

Query: 358 AVNLLMHIYRKEFTSMGGYLTDAGEVSLERVEHFIQAVAIHEDQIFQKRVRIQQATXXXX 417
           AVNLLMHIYRKEFT+MGGYLTDAGEV LERVE+FIQ VA+HE+QIFQKRVRIQQ+     
Sbjct: 360 AVNLLMHIYRKEFTAMGGYLTDAGEVFLERVENFIQCVAVHEEQIFQKRVRIQQSQEFNE 419

Query: 418 XXXXXXXXXXXXXXXXSVLDKVKLDQPGYKERYYVEKFGALELGEIDKIKKDTVLNYVEG 477
                           SV+DKVKL QPGY ERYY EKFGA +  EI++IKKD VL YVEG
Sbjct: 420 GMRARARGEMPEEPRASVVDKVKLGQPGYTERYYAEKFGASD-PEIERIKKDIVLKYVEG 478

Query: 478 LCWVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASS 537
           LCWVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFF+GEPF+PFDQLMGTLP+SS
Sbjct: 479 LCWVCRYYYQGVCSWQWYYPYHYAPFASDLKDLADLEITFFMGEPFRPFDQLMGTLPSSS 538

Query: 538 SSALPEKYRDLMIDPSSPILQFYPSDFEIDMNGKRFAWQGVAKLPFINEKKLLAATRKLE 597
           SSALPE+YRDLMI+PSSPILQFYPSDFEIDMNGK+++WQGVAKLPFI+EKKLL+ATR LE
Sbjct: 539 SSALPERYRDLMINPSSPILQFYPSDFEIDMNGKKYSWQGVAKLPFIDEKKLLSATRTLE 598

Query: 598 GTLTEEEQLRNSVMLDFLYVSGAHYLAPYILWYYQHYSHLPLHQRPALPIDSNASGGMNG 657
           GTLTEEEQLRNS MLD LYVS AH L P+IL+YYQ+YSHLP  QRP LPID +AS GMNG
Sbjct: 599 GTLTEEEQLRNSKMLDLLYVSRAHKLVPHILFYYQNYSHLPHQQRPVLPIDPSASDGMNG 658

Query: 658 YLWLYERNVLRTVVSSPIKGLQDVERNQVLN 688
           +LW YERNV RTVVSSPIKGLQD+  NQVL+
Sbjct: 659 FLWSYERNVFRTVVSSPIKGLQDIACNQVLH 689


>Medtr4g051920.1 | 5'-3' exoribonuclease | HC |
           chr4:18782027-18788114 | 20130731
          Length = 846

 Score =  348 bits (893), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 191/427 (44%), Positives = 250/427 (58%), Gaps = 83/427 (19%)

Query: 1   MGVPAFYRWLADRYPLSIADVVEEEPSAAGVPFPVDVSKPNPN--GMEFDNLYLDMNGII 58
           MGVP+FYRWL ++YP +  D+                  PN N   +E+DNLYLDMN II
Sbjct: 1   MGVPSFYRWLLNKYPKAFEDI-----------------NPNTNTTNVEYDNLYLDMNSII 43

Query: 59  HPCFHPDGKQA-----PATYDDVFRSMFDYIDHLFALVRPRKLLYLAIDGVAPRAKMNQQ 113
           HPCFHP+         P T+ +VF +MF+YID L  + +PRKLLY+AIDGVAPRAKMNQQ
Sbjct: 44  HPCFHPNDDDNNNGTPPTTFVEVFANMFEYIDRLVTIAKPRKLLYMAIDGVAPRAKMNQQ 103

Query: 114 RSXXXXXXXXXXXXXXXXXXXXXXFEGEMELLPSLDKPETYDSNVITPGTPFMAVLSVAL 173
           R+                      FE E + +    + E  DSN+ITPGT FM  +S AL
Sbjct: 104 RTRRFRNVKDDEMREVEEERLRKEFEMEGKQVLPKQECEVSDSNIITPGTDFMHQISNAL 163

Query: 174 QYYIQTRLNNNPGWRHTKVILSDSNVPGEGEHKIMEYIRLQRNLPGFNPNTRHCLYGLDA 233
           + YI ++++++P W+   VILSD+NVPGEGEHK+M +IR QR LP ++PNT HCLYG DA
Sbjct: 164 KSYISSKISSDPLWKGIMVILSDANVPGEGEHKVMSFIRKQRGLPDYDPNTVHCLYGSDA 223

Query: 234 DLIMLSLATHEVHFSILREVITLPGQQEKCFQCGQAGHLAAECRGKPGEKAEDWNPVDDT 293
           DLIML L+ HE HFSILRE+                                        
Sbjct: 224 DLIMLGLSCHEPHFSILREL---------------------------------------- 243

Query: 294 PIHKKKYQFLNIWVLREYLQYELEIPNPP--FEIDFERIIDDFVFMCFFVGNDFLPHMPT 351
                    L+IW+LREYL+ E++I +PP  F  D ERI+DDF+F+CFF GNDFLPH+P+
Sbjct: 244 ---------LHIWLLREYLEIEMKIEDPPKNFVFDLERIVDDFIFICFFSGNDFLPHLPS 294

Query: 352 LEIREGAVNLLMHIYRKEFTSMGGYLTDAGE--------VSLERVEHFIQAVAIHEDQIF 403
           L I E A++LLM +Y+KEF+ +GGYL D  +        V L RVE F+  V  +E++IF
Sbjct: 295 LYIHEDAIDLLMTVYKKEFSKIGGYLVDINKIGEKHGAYVKLSRVEKFVLMVGTYEEKIF 354

Query: 404 QKRVRIQ 410
            KR  I+
Sbjct: 355 SKRTAIR 361



 Score =  211 bits (537), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/193 (52%), Positives = 126/193 (65%)

Query: 435 VLDKVKLDQPGYKERYYVEKFGALELGEIDKIKKDTVLNYVEGLCWVCRYYYQGVCSWQW 494
           + DK+KL   G+KERYY EKF       I+  +K+ V  Y EGL WV +YY+ GV SW W
Sbjct: 445 LTDKIKLGNVGFKERYYKEKFSVEGSTNIELKRKEIVQKYTEGLLWVLQYYFSGVASWTW 504

Query: 495 YYPYHYAPFASDLKDLADLEITFFLGEPFKPFDQLMGTLPASSSSALPEKYRDLMIDPSS 554
           +YPYHY PF SDLK +A + + F  G PF PFDQL+  LP  S+ ALP+ Y  LM+D  S
Sbjct: 505 FYPYHYGPFVSDLKGMAQVRVNFEKGVPFLPFDQLLSVLPQKSAYALPKAYAQLMLDEQS 564

Query: 555 PILQFYPSDFEIDMNGKRFAWQGVAKLPFINEKKLLAATRKLEGTLTEEEQLRNSVMLDF 614
            I   Y  DFEID+ GKRF WQGV KLP+++EK+LL  TR+L+  L+E E  RNSV +D 
Sbjct: 565 KIFDLYSQDFEIDIEGKRFMWQGVCKLPYMDEKRLLTETRELKNELSESEAKRNSVEVDR 624

Query: 615 LYVSGAHYLAPYI 627
           L VSG   LA  I
Sbjct: 625 LLVSGTTKLAEKI 637