Miyakogusa Predicted Gene

Lj1g3v4955480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4955480.1 Non Characterized Hit- tr|D8SA29|D8SA29_SELML
Putative uncharacterized protein OS=Selaginella
moelle,40.13,1e-18,seg,NULL; no description,NULL; SEC-C,SEC-C
motif,CUFF.33723.1
         (213 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g114390.1 | SEC-C motif protein | HC | chr7:47223414-47226...   251   4e-67

>Medtr7g114390.1 | SEC-C motif protein | HC | chr7:47223414-47226602
           | 20130731
          Length = 211

 Score =  251 bits (641), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 130/218 (59%), Positives = 155/218 (71%), Gaps = 12/218 (5%)

Query: 1   MAATRITIANKI---HHRLSQYSNS--RSIFSTPQLQNSWVDXXXXXXXXXXXXXXXXXX 55
           MAA RI  AN+I   HH L  Y+N   RSI +T  LQ+SW+D                  
Sbjct: 1   MAALRI--ANRIINYHHNL-LYNNYQYRSISTTVHLQSSWMDKVKNVFTGQKSEGAPPDA 57

Query: 56  XXXXXXFTLLHFADEMKKARKIGAFKDYVVGRSSEVTFTTAFEKNEAIIRFLGVLDPTGE 115
                 FTLL+FADEMKKARK+GAFK+Y+VGRSSEVTF+TA EK E IIR+L   D TGE
Sbjct: 58  SQ----FTLLNFADEMKKARKVGAFKEYIVGRSSEVTFSTAIEKYEVIIRYLAAFDYTGE 113

Query: 116 KLQSXXXXXXXXHCNCTIIDVENALAKFTWAKEAQKKIEKLKEEGKPMPTSIAEVQKLVG 175
            L +        HCNCTI +VENALAKFTWAKEA KKI+KL +EGKPMP ++AE+QK+VG
Sbjct: 114 NLTTNQKHEAAKHCNCTIAEVENALAKFTWAKEAHKKIQKLNQEGKPMPKNMAELQKMVG 173

Query: 176 SSPLDHARSNLAQSGQISRNAPCPCGSKKRYKRCCAKD 213
           ++P+D A+SNLA+SGQ+SRNA CPCGSKKRYKRCC KD
Sbjct: 174 TNPMDIAKSNLAKSGQVSRNALCPCGSKKRYKRCCGKD 211