Miyakogusa Predicted Gene
- Lj1g3v4955430.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4955430.1 tr|B9I614|B9I614_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_241858
PE=4,38.46,0.00000000000001,DS_RBD,Double-stranded RNA-binding;
seg,NULL; Double-stranded RNA binding motif,Double-stranded
RNA-,CUFF.33717.1
(528 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g114310.1 | double-stranded RNA-binding motif protein | HC... 581 e-166
Medtr2g094490.1 | double-stranded RNA-binding motif protein | HC... 241 1e-63
Medtr4g058990.1 | double-stranded RNA-binding motif protein | HC... 238 8e-63
Medtr6g028020.2 | double-stranded RNA-binding motif protein | LC... 116 7e-26
Medtr6g028020.3 | double-stranded RNA-binding motif protein | LC... 115 8e-26
Medtr6g028020.1 | double-stranded RNA-binding motif protein | LC... 115 9e-26
Medtr3g100120.2 | double-stranded RNA-binding motif protein | LC... 102 7e-22
Medtr3g100120.1 | double-stranded RNA-binding motif protein | LC... 102 7e-22
Medtr3g079700.1 | double-stranded RNA-binding motif protein | LC... 88 2e-17
Medtr3g079670.1 | double-stranded RNA-binding motif protein | HC... 84 3e-16
Medtr3g079720.1 | double-stranded RNA-binding motif protein | LC... 81 3e-15
Medtr3g079650.1 | double-stranded RNA-binding motif protein | LC... 78 3e-14
Medtr5g079490.1 | double-stranded RNA-binding motif protein | LC... 61 2e-09
Medtr6g092600.1 | double-stranded RNA-binding motif protein | LC... 59 1e-08
Medtr4g007820.1 | double-stranded RNA-binding motif protein | HC... 55 1e-07
Medtr4g007820.2 | double-stranded RNA-binding motif protein | HC... 55 1e-07
Medtr6g092580.1 | double-stranded RNA-binding motif protein | LC... 54 3e-07
>Medtr7g114310.1 | double-stranded RNA-binding motif protein | HC |
chr7:47187253-47183014 | 20130731
Length = 505
Score = 581 bits (1497), Expect = e-166, Method: Compositional matrix adjust.
Identities = 335/514 (65%), Positives = 363/514 (70%), Gaps = 39/514 (7%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFK TVNFNGE FESPTFCSTLRQAEHAA
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKVTVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
AEVALNT A RGPSR LAARVLDETGVYKNLLQETAHRAGLNLPVY TIR+GPGHVPN+
Sbjct: 61 AEVALNTLATRGPSRTLAARVLDETGVYKNLLQETAHRAGLNLPVYRTIRAGPGHVPNFY 120
Query: 121 CTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPRLHL-------SSSESKGNEEQE 173
CTVEIAGMHFTGDPART LRKL L SSESK NEEQE
Sbjct: 121 CTVEIAGMHFTGDPARTKKQAQKNAAIAAWSALRKLSANQLSSSTSSSFSSESKSNEEQE 180
Query: 174 QVIIARVLASLHPCRSKNFSESDHQHRYQNSSSTKV---QPTLGMYPPQWQHCGISSFSP 230
VIIARVLASL SKNF E DHQHR+Q S++T + QPT GMYP Q+QHCGIS+FSP
Sbjct: 181 HVIIARVLASLQSSGSKNFPECDHQHRWQKSTTTSLVSTQPTPGMYPMQYQHCGISNFSP 240
Query: 231 DLTLYXXXXXXXXXXXXNSLLALTXXXXXXXXXXXYPLVQSVLQPDHCHYFPPRELASVP 290
+L LY ++ALT YPL+QSV+QPD YFP +EL+S P
Sbjct: 241 ELALY---QTWQQEQIMQQMMALTIQPIIPPAPQIYPLMQSVIQPDRYLYFPSKELSSFP 297
Query: 291 VGPRFSIAASRPSFYFSNQIVPELNRGRSTVTIREIQEEKVEDPSVCNFSNETRVPT--- 347
VGP FSIA RP FY+SNQIVP+LN GRSTVTIREIQEEK ED VCNFSNETRV +
Sbjct: 298 VGPNFSIATPRPPFYYSNQIVPQLNTGRSTVTIREIQEEKAEDSQVCNFSNETRVQSPAP 357
Query: 348 EDERQKH-GSGSRRRNAELVGEQSGKSEWDSHRNIGSIHKPANIELQNSSNIDTSVPRGH 406
E+ RQ H GS S LVGEQS KSEWDSHR+ +QN S I + H
Sbjct: 358 ENVRQNHVGSRSSSSRNGLVGEQSLKSEWDSHRS-----------MQNPSRITIA----H 402
Query: 407 LQASFNRSFRSRAVSSSMVRTMAPTSPPGSRPRHPEVPLAVASRLRTGVPRSPGMPTSER 466
QAS NR FRS A S S VRT PTS GS +H EVP+AVA RLRTGVP++PGM
Sbjct: 403 SQASSNRCFRSPAASYSTVRTTGPTSSTGSTVQHREVPMAVAPRLRTGVPQNPGM----- 457
Query: 467 LGMSPTSLFT-APPVRIRSVVPVCSAPPGRSIAE 499
+PT F AP VRIRSVVPVCSAPP RS+AE
Sbjct: 458 -VRTPTPRFNMAPAVRIRSVVPVCSAPPRRSVAE 490
>Medtr2g094490.1 | double-stranded RNA-binding motif protein | HC |
chr2:40288473-40292848 | 20130731
Length = 408
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 116/182 (63%), Positives = 139/182 (76%), Gaps = 1/182 (0%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKATVNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
AEVALN+ + RGPS +LAA++LDETGVYKNLLQE A R G LP YTT RSG GH+P ++
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFT 120
Query: 121 CTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPRLHLSSS-ESKGNEEQEQVIIAR 179
VE+AG+ FTG+PA+ L++L + SSS E + N+E EQ+ IAR
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIAR 180
Query: 180 VL 181
L
Sbjct: 181 AL 182
>Medtr4g058990.1 | double-stranded RNA-binding motif protein | HC |
chr4:21760281-21755984 | 20130731
Length = 473
Score = 238 bits (608), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 114/182 (62%), Positives = 139/182 (76%), Gaps = 1/182 (0%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+Y+CIREGPDHAPRFKATVNFNGE FESP +C+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCTTLRQAEHSA 60
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
AEVAL++ + RGPS +LAA++LDETGVYKNLLQE A R G LP YTT RSG GH+P ++
Sbjct: 61 AEVALSSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 CTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPRLHLSSS-ESKGNEEQEQVIIAR 179
TVE+AG+ FTG+ A+ L++L + SSS E + N+E EQ+ IAR
Sbjct: 121 GTVELAGITFTGEHAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIAR 180
Query: 180 VL 181
L
Sbjct: 181 AL 182
>Medtr6g028020.2 | double-stranded RNA-binding motif protein | LC |
chr6:9916610-9922373 | 20130731
Length = 503
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
+YK++LQ AQ+ LP Y+ EGP H RF+ V +G+ FESP F STLR AE+AA
Sbjct: 132 LYKSQLQNYAQKRNLKLPEYAPEWEGPPHNMRFRCKVTIDGQTFESPRFYSTLRDAEYAA 191
Query: 61 AEVALNTFAERGPSRALAARVLDETGV--YKNLLQETAHRAG-LNLPVYTTIRSGPGHVP 117
AEVA + G + E G+ YKNLLQE + G L LPVY+T +SG H P
Sbjct: 192 AEVAFKSLQPAG---------VQEEGILMYKNLLQELIQKGGLLQLPVYSTTKSGEAHRP 242
Query: 118 NYSCTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPRLHLSSSESKGNEEQEQVII 177
++ VEI G +TG+ ++T L++L S E N + V+I
Sbjct: 243 TFTSQVEIEGKVYTGEESKTKKQAEMSAAKVAYTTLKELKAHGGQSPELFPNGSKSNVVI 302
Query: 178 A 178
Sbjct: 303 G 303
>Medtr6g028020.3 | double-stranded RNA-binding motif protein | LC |
chr6:9910995-9922435 | 20130731
Length = 528
Score = 115 bits (289), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
+YK++LQ AQ+ LP Y+ EGP H RF+ V +G+ FESP F STLR AE+AA
Sbjct: 158 LYKSQLQNYAQKRNLKLPEYAPEWEGPPHNMRFRCKVTIDGQTFESPRFYSTLRDAEYAA 217
Query: 61 AEVALNTFAERGPSRALAARVLDETGV--YKNLLQETAHRAG-LNLPVYTTIRSGPGHVP 117
AEVA + G + E G+ YKNLLQE + G L LPVY+T +SG H P
Sbjct: 218 AEVAFKSLQPAG---------VQEEGILMYKNLLQELIQKGGLLQLPVYSTTKSGEAHRP 268
Query: 118 NYSCTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPRLHLSSSESKGNEEQEQVII 177
++ VEI G +TG+ ++T L++L S E N + V+I
Sbjct: 269 TFTSQVEIEGKVYTGEESKTKKQAEMSAAKVAYTTLKELKAHGGQSPELFPNGSKSNVVI 328
Query: 178 A 178
Sbjct: 329 G 329
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYK +LQEL Q++ + LP Y REGP H RF TV N +F SP T++ ++ +A
Sbjct: 1 MYKTKLQELCQKNSYPLPEYQTTREGPPHNSRFSTTVTVNSISFSSPEPARTIKLSQDSA 60
Query: 61 AEVAL 65
A VA
Sbjct: 61 AMVAF 65
>Medtr6g028020.1 | double-stranded RNA-binding motif protein | LC |
chr6:9910998-9922435 | 20130731
Length = 529
Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
+YK++LQ AQ+ LP Y+ EGP H RF+ V +G+ FESP F STLR AE+AA
Sbjct: 158 LYKSQLQNYAQKRNLKLPEYAPEWEGPPHNMRFRCKVTIDGQTFESPRFYSTLRDAEYAA 217
Query: 61 AEVALNTFAERGPSRALAARVLDETGV--YKNLLQETAHRAG-LNLPVYTTIRSGPGHVP 117
AEVA + G + E G+ YKNLLQE + G L LPVY+T +SG H P
Sbjct: 218 AEVAFKSLQPAG---------VQEEGILMYKNLLQELIQKGGLLQLPVYSTTKSGEAHRP 268
Query: 118 NYSCTVEIAGMHFTGDPARTXXXXXXXXXXXXXXXLRKLPRLHLSSSESKGNEEQEQVII 177
++ VEI G +TG+ ++T L++L S E N + V+I
Sbjct: 269 TFTSQVEIEGKVYTGEESKTKKQAEMSAAKVAYTTLKELKAHGGQSPELFPNGSKSNVVI 328
Query: 178 A 178
Sbjct: 329 G 329
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MYK +LQEL Q++ + LP Y REGP H RF TV N +F SP T++ ++ +A
Sbjct: 1 MYKTKLQELCQKNSYPLPEYQTTREGPPHNSRFSTTVTVNSISFSSPEPARTIKLSQDSA 60
Query: 61 AEVAL 65
A VA
Sbjct: 61 AMVAF 65
>Medtr3g100120.2 | double-stranded RNA-binding motif protein | LC |
chr3:46001282-45997216 | 20130731
Length = 660
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P F++TV N ++S + AE +A
Sbjct: 16 VFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLAGFFNRKAAEQSA 75
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSG--PGHVPN 118
AEVAL A+ G + + ETG+ KNLLQE A + +P+Y + + PG P
Sbjct: 76 AEVALMELAKTGEVNQSITQPVHETGLCKNLLQEYAQKMNYAMPLYQSKKDDTPPGRAPL 135
Query: 119 YSCTVEIAGMHFTGDPART 137
YSCTV+I GM + G A+T
Sbjct: 136 YSCTVDIGGMLYIGGTAKT 154
>Medtr3g100120.1 | double-stranded RNA-binding motif protein | LC |
chr3:46001282-45997216 | 20130731
Length = 662
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 2/139 (1%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P F++TV N ++S + AE +A
Sbjct: 18 VFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLAGFFNRKAAEQSA 77
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSG--PGHVPN 118
AEVAL A+ G + + ETG+ KNLLQE A + +P+Y + + PG P
Sbjct: 78 AEVALMELAKTGEVNQSITQPVHETGLCKNLLQEYAQKMNYAMPLYQSKKDDTPPGRAPL 137
Query: 119 YSCTVEIAGMHFTGDPART 137
YSCTV+I GM + G A+T
Sbjct: 138 YSCTVDIGGMLYIGGTAKT 156
>Medtr3g079700.1 | double-stranded RNA-binding motif protein | LC |
chr3:35967574-35973361 | 20130731
Length = 714
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
+ K +LQ A+++ + P ++ EG H R+KA V +G++FESPTF +T+ +AE A
Sbjct: 415 LSKKQLQNYARKNNLDPPVFTFKTEGLPHDFRYKAIVVIDGKSFESPTFLNTIEEAEQAT 474
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
A+ AL E S L + DE+ K+LL E R G + P Y T SG H+P Y
Sbjct: 475 AKFALR---ELPISADLFQK--DESCPSKSLLLELTQREGYSKPTYMTTESGSPHMPTYY 529
Query: 121 CTVEIAGMHFTGDPART 137
TVE+ G+ F G +R+
Sbjct: 530 STVEVEGLKFHGKASRS 546
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 24/131 (18%)
Query: 7 QELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAAAEVALN 66
Q AQ + + P + EGP H +KA+V + ++FESP F +T ++ E
Sbjct: 118 QNYAQNNNLDSPVLTTEAEGPSHDVHYKASVVIDAKSFESPIFFNTKKEEEQ-------- 169
Query: 67 TFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYSCTVEIA 126
+E+ YK+LLQE + G + P Y T ++G H+P + VE+
Sbjct: 170 ----------------EESRSYKSLLQELTQKKGFSKPTYKTTQTGSLHMPTFFSAVEVE 213
Query: 127 GMHFTGDPART 137
G+ F G+ +R+
Sbjct: 214 GVEFHGNASRS 224
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 63/155 (40%), Gaps = 25/155 (16%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIR-EGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHA 59
M K RLQEL + ++LP YS + +GP H P FK +V NG F S F S+ A
Sbjct: 1 MNKMRLQELCHQRKWSLPKYSALNVDGPPHKPSFKGSVFVNGLTFTSDAFHSSKEAHNQA 60
Query: 60 AAEVALN-----------TFAERGPSRALAAR------------VLDETGVYKNLL-QET 95
A + LN T + AA+ ++ +T L Q
Sbjct: 61 ALKALLNFSSPSSSSSIPTNEYSSEEKVDAAKPQKYPVPSEFPHIISDTDCLSKLQHQNY 120
Query: 96 AHRAGLNLPVYTTIRSGPGHVPNYSCTVEIAGMHF 130
A L+ PV TT GP H +Y +V I F
Sbjct: 121 AQNNNLDSPVLTTEAEGPSHDVHYKASVVIDAKSF 155
>Medtr3g079670.1 | double-stranded RNA-binding motif protein | HC |
chr3:35955140-35957326 | 20130731
Length = 372
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 74/131 (56%), Gaps = 13/131 (9%)
Query: 7 QELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAAAEVALN 66
Q A+++ + P ++ EGP H R+KA V +G++FESPT +T+++AE AAA+ +
Sbjct: 113 QNCARKNDLDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKF-VG 171
Query: 67 TFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYSCTVEIA 126
F + DE K+LLQE + R G + P Y T + GP H+P + TVE+
Sbjct: 172 MFQK------------DEPCPSKSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVE 219
Query: 127 GMHFTGDPART 137
G+ F G +++
Sbjct: 220 GIGFHGKASKS 230
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIR-EGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHA 59
M+K++LQEL R ++LP YS +GP H P FK +V NG F S ++ +A++
Sbjct: 1 MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60
Query: 60 AAEVALNTFA-----------ERGPSRALAAR------VLDETGVYKNLL--QETAHRAG 100
AA A F E G + A VL ++ V K+ Q A +
Sbjct: 61 AAMKAFRNFTSPLSSSSKPTNEHGSKEEVKAVKPQESPVLQQSPVIKSDTDHQNCARKND 120
Query: 101 LNLPVYTTIRSGPGHVPNYSCTVEIAGMHF 130
L+ PV+T GP H Y V I G F
Sbjct: 121 LDQPVFTIKTEGPPHDIRYKAIVVIDGKSF 150
>Medtr3g079720.1 | double-stranded RNA-binding motif protein | LC |
chr3:35977761-35980465 | 20130731
Length = 390
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 11/131 (8%)
Query: 4 NRLQ--ELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAAA 61
N+LQ A ++ + P ++ EGP R+ ATV +G++F+SPT T ++AE AA
Sbjct: 114 NKLQHQNYASKNNLDSPVFTIEAEGPPRDIRYNATVVVDGKSFKSPTSFDTRKEAEQAAL 173
Query: 62 EVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYSC 121
++ ++ F R L+ET K+LLQE R ++P Y + R+GP H+P +
Sbjct: 174 QI-VDMFQARS--------ALNETCASKSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFS 224
Query: 122 TVEIAGMHFTG 132
TVE+ G+ F G
Sbjct: 225 TVEVEGVEFHG 235
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 67/156 (42%), Gaps = 26/156 (16%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIR-EGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHA 59
MYK+RLQE R ++LP YS I +GP H P FK +V NG F S + ++A +
Sbjct: 1 MYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPSFKGSVFVNGLTFTSSDIFHSSKEAHNQ 60
Query: 60 AAEVALNTFA-----------ERGPSRALAA-------------RVLDETGVYKNLL-QE 94
AA AL F+ E G + A +L +T L Q
Sbjct: 61 AAMKALLNFSYPSSSSSMPTNEYGSKEKVGAAKPQKCPVPSQFPDILSDTDRLNKLQHQN 120
Query: 95 TAHRAGLNLPVYTTIRSGPGHVPNYSCTVEIAGMHF 130
A + L+ PV+T GP Y+ TV + G F
Sbjct: 121 YASKNNLDSPVFTIEAEGPPRDIRYNATVVVDGKSF 156
>Medtr3g079650.1 | double-stranded RNA-binding motif protein | LC |
chr3:35950333-35953425 | 20130731
Length = 414
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 9/137 (6%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
+ K LQ A+++ + P ++ E +KATV + ++FESPTF +++++AE AA
Sbjct: 112 LSKKHLQNYARKNNLDPPVFTIKTERL----HYKATVVIDEKSFESPTFFNSIKEAEQAA 167
Query: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
A++AL E S L + DE+ K+LL E R G + P YTTI SG H+ Y
Sbjct: 168 AKIALR---ELPISVDLFQK--DESCPSKSLLLELTQREGYSKPTYTTIESGSLHMRTYF 222
Query: 121 CTVEIAGMHFTGDPART 137
TVE+ G+ F G +R+
Sbjct: 223 STVEVEGLKFHGKASRS 239
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
M+K +LQ+L + ++LP Y+ +GP H P F A+V+ NG F S ++ ++A++ A
Sbjct: 1 MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60
Query: 61 AEVALNTFA-----------ERGPSRALAARV--------------LDETGVYKNLLQET 95
A A F E G + A D + K LQ
Sbjct: 61 AMKAFRNFTSPLSGFSIPTDEYGSKEKVEATKPQESPLPAQSPVIRTDTNRLSKKHLQNY 120
Query: 96 AHRAGLNLPVYTTIRSGPGHVPNYSCTVEIAGMHF 130
A + L+ PV+ TI++ H Y TV I F
Sbjct: 121 ARKNNLDPPVF-TIKTERLH---YKATVVIDEKSF 151
>Medtr5g079490.1 | double-stranded RNA-binding motif protein | LC |
chr5:33978474-33982314 | 20130731
Length = 357
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
M+KN L + A +S P + EG AP ++++V +G F S + AE
Sbjct: 27 MFKNNLIQFALKSNMKHPEFFSRNEGSIQAPAYRSSVMVDGLVFTSQLTFFHRKAAEQEV 86
Query: 61 AEVALNTFAERGPSRALAARVLDETGVY-KNLLQETAHRAGLNLPVYTTIRSGPGHVPNY 119
A AL ++ A + ++ E + K +L E A + + LP Y ++ +P +
Sbjct: 87 ARFALEYLTKKVKDEAYS--IMSEAVTFCKTVLNEYASKLSIQLPTYKSVEYKE-VIPYF 143
Query: 120 SCTVEIAGMHFTGDPAR 136
CT+++ G +TGD AR
Sbjct: 144 VCTLDLNGTSYTGDAAR 160
>Medtr6g092600.1 | double-stranded RNA-binding motif protein | LC
| chr6:34873895-34873668 | 20130731
Length = 75
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
MY N+LQEL Q++ + LP Y EGP H P F +TV +F SP STL+ ++
Sbjct: 1 MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60
Query: 61 AEVALNTFAER 71
A VA + F +
Sbjct: 61 AMVAFHHFLQN 71
>Medtr4g007820.1 | double-stranded RNA-binding motif protein | HC |
chr4:1278710-1274464 | 20130731
Length = 320
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 2 YKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAAA 61
YKN L E A RS P + +G HAP F++TV G+ F F S L AA
Sbjct: 28 YKNDLIEFALRSKMKSPEFFVRNKGSSHAPAFESTV-MVGDLF----FTSQLTFFHRKAA 82
Query: 62 EVALNTFAERGPSRAL---AARVLDETGVY-KNLLQETAHRAGLNLPVYTTIRSGPGHVP 117
E ++ FA ++ + A ++ E + K +L + A + + LP Y ++ +P
Sbjct: 83 EQEVSRFALEHLTKKIKDEAYSIMSEAVTFCKAVLNDYASKLRIQLPTYNSVEYIEV-IP 141
Query: 118 NYSCTVEIAGMHFTGDPAR 136
+ CT+++ G +TG AR
Sbjct: 142 YFLCTLDLNGTSYTGVAAR 160
>Medtr4g007820.2 | double-stranded RNA-binding motif protein | HC |
chr4:1278710-1274464 | 20130731
Length = 320
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 2 YKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAAA 61
YKN L E A RS P + +G HAP F++TV G+ F F S L AA
Sbjct: 28 YKNDLIEFALRSKMKSPEFFVRNKGSSHAPAFESTV-MVGDLF----FTSQLTFFHRKAA 82
Query: 62 EVALNTFAERGPSRAL---AARVLDETGVY-KNLLQETAHRAGLNLPVYTTIRSGPGHVP 117
E ++ FA ++ + A ++ E + K +L + A + + LP Y ++ +P
Sbjct: 83 EQEVSRFALEHLTKKIKDEAYSIMSEAVTFCKAVLNDYASKLRIQLPTYNSVEYIEV-IP 141
Query: 118 NYSCTVEIAGMHFTGDPAR 136
+ CT+++ G +TG AR
Sbjct: 142 YFLCTLDLNGTSYTGVAAR 160
>Medtr6g092580.1 | double-stranded RNA-binding motif protein | LC |
chr6:34868989-34871956 | 20130731
Length = 105
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 3 KNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAAAE 62
K +LQEL Q++ + LP Y EGP H P F +TV +F SP STL+ ++ AA
Sbjct: 33 KQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPASTLKASQEFAAM 92
Query: 63 VALNTFAE 70
VA + F +
Sbjct: 93 VAFHHFLQ 100