Miyakogusa Predicted Gene

Lj1g3v4955350.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4955350.1 tr|Q56VR6|Q56VR6_LOTJA Superoxide dismutase
[Cu-Zn] OS=Lotus japonicus GN=sodCc PE=2 SV=1,100,0,Cu,Zn superoxide
dismutase-like,Superoxide dismutase, copper/zinc binding domain; no
description,Sup,CUFF.33903.1
         (152 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g114240.1 | superoxide dismutase [Cu-Zn] protein | HC | ch...   271   1e-73
Medtr7g114240.3 | superoxide dismutase [Cu-Zn] protein | HC | ch...   271   1e-73
Medtr6g029200.1 | superoxide dismutase [Cu-Zn] protein | HC | ch...   204   2e-53
Medtr6g029200.2 | superoxide dismutase [Cu-Zn] protein | HC | ch...   196   8e-51
Medtr4g057240.1 | superoxide dismutase [Cu-Zn] protein | HC | ch...   196   1e-50
Medtr7g114240.2 | superoxide dismutase [Cu-Zn] protein | HC | ch...   178   1e-45
Medtr4g101820.1 | Cu/Zn-superoxide dismutase copper chaperone | ...    58   4e-09

>Medtr7g114240.1 | superoxide dismutase [Cu-Zn] protein | HC |
           chr7:47131306-47132922 | 20130731
          Length = 152

 Score =  271 bits (694), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/152 (88%), Positives = 145/152 (95%)

Query: 1   MVKAVAVLGSSDNVKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVLG+S++V GTI+F+QEG+GPT V+G +SGLKPGLHGFH+HALGDTTNGCLSTG
Sbjct: 1   MVKAVAVLGNSNDVSGTISFTQEGNGPTTVTGNLSGLKPGLHGFHIHALGDTTNGCLSTG 60

Query: 61  PHFNPAGKEHGAPEDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHA 120
           PHFNP GKEHGAPED  RHAGDLGNVTVGDDGT SF+ITD+QIPLTGPNSIIGRAVVVHA
Sbjct: 61  PHFNPNGKEHGAPEDETRHAGDLGNVTVGDDGTASFTITDNQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
           DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152


>Medtr7g114240.3 | superoxide dismutase [Cu-Zn] protein | HC |
           chr7:47131306-47132922 | 20130731
          Length = 152

 Score =  271 bits (694), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/152 (88%), Positives = 145/152 (95%)

Query: 1   MVKAVAVLGSSDNVKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVLG+S++V GTI+F+QEG+GPT V+G +SGLKPGLHGFH+HALGDTTNGCLSTG
Sbjct: 1   MVKAVAVLGNSNDVSGTISFTQEGNGPTTVTGNLSGLKPGLHGFHIHALGDTTNGCLSTG 60

Query: 61  PHFNPAGKEHGAPEDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHA 120
           PHFNP GKEHGAPED  RHAGDLGNVTVGDDGT SF+ITD+QIPLTGPNSIIGRAVVVHA
Sbjct: 61  PHFNPNGKEHGAPEDETRHAGDLGNVTVGDDGTASFTITDNQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
           DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152


>Medtr6g029200.1 | superoxide dismutase [Cu-Zn] protein | HC |
           chr6:10035658-10039807 | 20130731
          Length = 161

 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 122/151 (80%), Gaps = 1/151 (0%)

Query: 2   VKAVAVLGSSDNVKGTITFSQEGDG-PTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTG 60
           VK VA++   +NV+G++ F Q  +G  T+V+G I+GL PGLHGFH+HALGDTTNGC STG
Sbjct: 8   VKGVALIIGDNNVRGSLHFLQHPNGNYTHVTGKITGLSPGLHGFHIHALGDTTNGCNSTG 67

Query: 61  PHFNPAGKEHGAPEDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHA 120
           PHFNP  K+HGAP D  RHAGDLGN+  G DG    SI D +IPL+G +SI+GRAVVVHA
Sbjct: 68  PHFNPLKKDHGAPTDDERHAGDLGNIVAGPDGVAEISIRDGKIPLSGVHSILGRAVVVHA 127

Query: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151
           DPDDLG+GGHELSKTTGNAG RVACGIIGLQ
Sbjct: 128 DPDDLGRGGHELSKTTGNAGARVACGIIGLQ 158


>Medtr6g029200.2 | superoxide dismutase [Cu-Zn] protein | HC |
           chr6:10035658-10039807 | 20130731
          Length = 151

 Score =  196 bits (497), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 101/150 (67%), Positives = 116/150 (77%), Gaps = 9/150 (6%)

Query: 2   VKAVAVLGSSDNVKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTGP 61
           VK VA++   +NV+G  T         +V+G I+GL PGLHGFH+HALGDTTNGC STGP
Sbjct: 8   VKGVALIIGDNNVRGNYT---------HVTGKITGLSPGLHGFHIHALGDTTNGCNSTGP 58

Query: 62  HFNPAGKEHGAPEDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHAD 121
           HFNP  K+HGAP D  RHAGDLGN+  G DG    SI D +IPL+G +SI+GRAVVVHAD
Sbjct: 59  HFNPLKKDHGAPTDDERHAGDLGNIVAGPDGVAEISIRDGKIPLSGVHSILGRAVVVHAD 118

Query: 122 PDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151
           PDDLG+GGHELSKTTGNAG RVACGIIGLQ
Sbjct: 119 PDDLGRGGHELSKTTGNAGARVACGIIGLQ 148


>Medtr4g057240.1 | superoxide dismutase [Cu-Zn] protein | HC |
           chr4:20936894-20933134 | 20130731
          Length = 206

 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 112/143 (78%)

Query: 8   LGSSDNVKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTGPHFNPAG 67
           L  +  V+G +T +QE +GPT V+  I+GL PGLHGFH+H  GDTTNGC+STGPHFNP  
Sbjct: 61  LKGNSTVEGVVTLTQENEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQ 120

Query: 68  KEHGAPEDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHADPDDLGK 127
             HGAPED IRHAGDLGN+    +G    +I D+QIPLTGPNS++GRA+VVH   DDLGK
Sbjct: 121 LTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGK 180

Query: 128 GGHELSKTTGNAGGRVACGIIGL 150
           GGHELS +TGNAGGR+ACG++GL
Sbjct: 181 GGHELSLSTGNAGGRLACGVVGL 203


>Medtr7g114240.2 | superoxide dismutase [Cu-Zn] protein | HC |
           chr7:47131306-47132217 | 20130731
          Length = 130

 Score =  178 bits (452), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 96/103 (93%)

Query: 1   MVKAVAVLGSSDNVKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTG 60
           MVKAVAVLG+S++V GTI+F+QEG+GPT V+G +SGLKPGLHGFH+HALGDTTNGCLSTG
Sbjct: 1   MVKAVAVLGNSNDVSGTISFTQEGNGPTTVTGNLSGLKPGLHGFHIHALGDTTNGCLSTG 60

Query: 61  PHFNPAGKEHGAPEDAIRHAGDLGNVTVGDDGTTSFSITDSQI 103
           PHFNP GKEHGAPED  RHAGDLGNVTVGDDGT SF+ITD+Q+
Sbjct: 61  PHFNPNGKEHGAPEDETRHAGDLGNVTVGDDGTASFTITDNQV 103


>Medtr4g101820.1 | Cu/Zn-superoxide dismutase copper chaperone | HC
           | chr4:42120514-42125478 | 20130731
          Length = 312

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 14  VKGTITFSQEGDGPTNVSGTISGLKPGLHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAP 73
           + G +  +Q       +    SGL PG H + ++  GD T G  STG  FNP  +E+   
Sbjct: 166 IFGVVRLAQVNMELARIEANFSGLSPGKHSWSINEFGDLTRGAASTGKVFNPLNEENTK- 224

Query: 74  EDAIRHAGDLGNVTVGDDGTTSFSITDSQIPLTGPNSIIGRAVVVHADPD 123
                  GDLG + V + G   F+    ++ ++    +IGRAVV++A  D
Sbjct: 225 ----EPLGDLGTLDVNEKGEAFFTGVKEKLRVS---DLIGRAVVLYATED 267