Miyakogusa Predicted Gene

Lj1g3v4955320.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4955320.2 Non Characterized Hit- tr|A5C2D9|A5C2D9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,43.97,1e-16,seg,NULL; FAMILY NOT NAMED,NULL;
coiled-coil,NULL,CUFF.33705.2
         (148 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g114220.1 | ripening-regulated protein | HC | chr7:4711704...   179   9e-46
Medtr3g498775.2 | ripening-regulated protein | HC | chr3:4514507...   135   1e-32
Medtr3g498775.1 | ripening-regulated protein | HC | chr3:4514507...   129   1e-30
Medtr1g117130.1 | transmembrane protein, putative | LC | chr1:52...    66   9e-12

>Medtr7g114220.1 | ripening-regulated protein | HC |
           chr7:47117049-47128270 | 20130731
          Length = 637

 Score =  179 bits (454), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 92/120 (76%), Positives = 96/120 (80%), Gaps = 1/120 (0%)

Query: 5   EEATSALEKLRLVTQRMILTPEEMEEVVLKRCWLARYWGLCVRHGIHAEIAEAKCKYWST 64
           EEA S LEKL+L+TQRMILT EEMEEVVLKRCWLARYW LCVRHGIH EIAEAK KYWST
Sbjct: 385 EEAISTLEKLQLITQRMILTSEEMEEVVLKRCWLARYWNLCVRHGIHVEIAEAKSKYWST 444

Query: 65  FAP-NPVEVVLAAGEKAKXXXXXXXXXXXXXXXXNELSGEGNVENMLFVEQGLRELVSLK 123
           FAP NPV+VVLAAGEKAK                NELSGEGN+ENMLFVEQGLREL SLK
Sbjct: 445 FAPNNPVDVVLAAGEKAKVETNLDLEDIEYQRDLNELSGEGNIENMLFVEQGLRELTSLK 504


>Medtr3g498775.2 | ripening-regulated protein | HC |
           chr3:45145070-45136605 | 20130731
          Length = 405

 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 83/114 (72%), Gaps = 4/114 (3%)

Query: 14  LRLVTQRMILTPEEMEEVVLKRCWLARYWGLCVRHGIHAEIAEAKCKYWSTFAPNPVEVV 73
           LR +TQRMILT EEMEEVVLKRCWLARYWGL V+HGI A+IA++K ++WS+ AP P E+V
Sbjct: 153 LRSMTQRMILTQEEMEEVVLKRCWLARYWGLSVKHGICADIAQSKYEHWSSLAPLPFELV 212

Query: 74  LAAGEKAKX----XXXXXXXXXXXXXXXNELSGEGNVENMLFVEQGLRELVSLK 123
           ++AG+KAK                    N+L+GEGN+E+ML VE GLREL SLK
Sbjct: 213 ISAGQKAKEESWNKSTDGSDRSQTVRDINDLAGEGNIESMLSVEMGLRELASLK 266


>Medtr3g498775.1 | ripening-regulated protein | HC |
           chr3:45145070-45136608 | 20130731
          Length = 573

 Score =  129 bits (324), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/116 (57%), Positives = 84/116 (72%), Gaps = 4/116 (3%)

Query: 12  EKLRLVTQRMILTPEEMEEVVLKRCWLARYWGLCVRHGIHAEIAEAKCKYWSTFAPNPVE 71
           + LR +TQRMILT EEMEEVVLKRCWLARYWGL V+HGI A+IA++K ++WS+ AP P E
Sbjct: 319 KALRSMTQRMILTQEEMEEVVLKRCWLARYWGLSVKHGICADIAQSKYEHWSSLAPLPFE 378

Query: 72  VVLAAGEKAKXXXXXXXX----XXXXXXXXNELSGEGNVENMLFVEQGLRELVSLK 123
           +V++AG+KAK                    N+L+GEGN+E+ML VE GLREL SLK
Sbjct: 379 LVISAGQKAKEESWNKSTDGSDRSQTVRDINDLAGEGNIESMLSVEMGLRELASLK 434


>Medtr1g117130.1 | transmembrane protein, putative | LC |
           chr1:52980452-52981375 | 20130731
          Length = 146

 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 35/41 (85%)

Query: 9   SALEKLRLVTQRMILTPEEMEEVVLKRCWLARYWGLCVRHG 49
           S ++ LR +TQRMILT +EMEEVVLKRCWLARYWGL  ++G
Sbjct: 77  SEVKTLRSMTQRMILTQKEMEEVVLKRCWLARYWGLATKYG 117