Miyakogusa Predicted Gene

Lj1g3v4955320.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4955320.1 Non Characterized Hit- tr|D7L318|D7L318_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,49.47,0.00000000002,seg,NULL; coiled-coil,NULL,CUFF.33705.1
         (352 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g114220.1 | ripening-regulated protein | HC | chr7:4711704...   225   5e-59

>Medtr7g114220.1 | ripening-regulated protein | HC |
           chr7:47117049-47128270 | 20130731
          Length = 637

 Score =  225 bits (573), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 165/348 (47%), Positives = 187/348 (53%), Gaps = 28/348 (8%)

Query: 1   MDRRRMQYDRQKXXXXXXXXXXXXXXXXXXLNRHSRAGSTGSAMINARRTQNTATKAAAQ 60
           MDRRRM YDRQ+                  LNRH+RAGSTGSAM N  RTQN ATKAAAQ
Sbjct: 1   MDRRRM-YDRQQSSTGTPTSPSSPVMMSP-LNRHARAGSTGSAMNNIGRTQNNATKAAAQ 58

Query: 61  RLAQVMSHSSSGIXXXXXXXXXXIALDYSAAXXXXXXXXXXXXXXXXMSVRSVQ-DQPPA 119
           RLAQVMSH +             + LDYSA                    RS+      A
Sbjct: 59  RLAQVMSHQT----IDEEEDDDDVPLDYSAIS----------------GTRSIGLGGGRA 98

Query: 120 PRSRSPMSVRSAQEQPPSARSRSPMTVRSAQEQPLSARARSP--LTVRTAQEQPIXXXXX 177
            R RSP+S+RS QEQP SARSRSPM  RSAQEQP SAR RSP  ++VR+ QEQP      
Sbjct: 99  ARPRSPVSIRSTQEQPLSARSRSPMKFRSAQEQPQSARPRSPAPVSVRSIQEQP-QSLRT 157

Query: 178 XXXXXXXXXXXXXDQTPTRTSTAGSQAEQQQPPSARSTGAIRTLDFSPSARTIAISR-VP 236
                        +QTP R ST  +Q EQQ PPSARST   RT D SPSAR++A+SR   
Sbjct: 158 ISSVRSSFSANTAEQTPPRISTHANQGEQQ-PPSARSTTTNRTFDLSPSARSLAMSRSAQ 216

Query: 237 SGNVSNDQXXXXXXXXXXXXXLSKXXXXXXXXXXITLRPASSMGIPPLEPPFDIKRDRRL 296
           S NV+NDQ             LSK          ITLRPA+S  IP  E   D ++DRRL
Sbjct: 217 SNNVNNDQPPSARANSGRPSGLSKVVPLVPASVPITLRPATSGNIPQTESISDGRKDRRL 276

Query: 297 SLDLGSMKVRENVPQQQRPTSXXXXXXXXXXXXXXXXVEKLRLAEERC 344
           SLDLGSMKVREN+  QQR T+                 EKLR A+ERC
Sbjct: 277 SLDLGSMKVRENLNPQQRSTTELEDELDMLQEENDNLHEKLRHADERC 324