Miyakogusa Predicted Gene

Lj1g3v4954970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4954970.1 Non Characterized Hit- tr|C6TIQ3|C6TIQ3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.54049
PE,46.67,0.0000000000008,seg,NULL,CUFF.33675.1
         (112 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g082370.1 | hypothetical protein | HC | chr1:36623115-3662...    89   1e-18
Medtr7g113870.1 | hypothetical protein | HC | chr7:46942088-4694...    64   3e-11

>Medtr1g082370.1 | hypothetical protein | HC |
           chr1:36623115-36622128 | 20130731
          Length = 152

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 77/145 (53%), Gaps = 36/145 (24%)

Query: 4   QRKVHFQNVGICYKLYHFIMKTLAAQAMKTVTLGHPSQYGSSS-------IDDDQAL--- 53
           QR++H Q++GICYKLY+FI KTLA+QA+KTVTLG  ++Y S+S        + D+ L   
Sbjct: 3   QRELHLQHLGICYKLYYFITKTLASQALKTVTLGCSARYSSTSTAPRGSDCEADKVLRLG 62

Query: 54  -------------------ISNAPKKI-----VSINDKVEEIIXXXXXXXXXXX-XXXXX 88
                               +  PK+I     VSI D VE+I+                 
Sbjct: 63  IPCNKDSPCTKVDEMVKEGTTRLPKRISLKKSVSICDNVEQILPNKKIKKRSKSFQKSSS 122

Query: 89  LDQEEEY-PMPLRSILKSGSNLNDK 112
           LDQEEE  P PLRSILK GS+LND+
Sbjct: 123 LDQEEEEEPKPLRSILKVGSDLNDQ 147


>Medtr7g113870.1 | hypothetical protein | HC |
          chr7:46942088-46942711 | 20130731
          Length = 134

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 36/44 (81%)

Query: 4  QRKVHFQNVGICYKLYHFIMKTLAAQAMKTVTLGHPSQYGSSSI 47
          ++++H ++V ICYKLY FIMK L+AQA KTVTLG  S YGSSS+
Sbjct: 3  KKELHLEHVNICYKLYDFIMKILSAQASKTVTLGRSSNYGSSSL 46