Miyakogusa Predicted Gene

Lj1g3v4931770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4931770.1 tr|G7KYQ4|G7KYQ4_MEDTR Nuclear transcription
factor Y subunit C-9 OS=Medicago truncatula
GN=MTR_7g11,90.04,0,Histone-fold,Histone-fold; no
description,Histone-fold; seg,NULL; CBFD_NFYB_HMF,Transcription
factor,CUFF.34045.1
         (258 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g113680.1 | nuclear transcription factor Y protein | HC | ...   383   e-107
Medtr1g082660.1 | nuclear transcription factor Y protein | HC | ...   327   6e-90
Medtr1g082660.2 | nuclear transcription factor Y protein | HC | ...   327   6e-90
Medtr3g099180.1 | nuclear transcription factor Y protein | HC | ...   189   2e-48
Medtr3g099180.2 | nuclear transcription factor Y protein | HC | ...   189   2e-48
Medtr2g023340.1 | core histone H2A/H2B/H3/H4 | LC | chr2:8235750...   156   1e-38
Medtr2g081600.1 | nuclear transcription factor Y protein | HC | ...   111   6e-25
Medtr2g081630.1 | nuclear transcription factor Y protein | HC | ...   110   2e-24
Medtr3g012030.2 | negative cofactor 2 transcriptional co-repress...    64   2e-10
Medtr8g041420.1 | negative cofactor 2 transcriptional co-repress...    63   2e-10
Medtr5g088760.2 | negative cofactor 2 transcriptional co-repress...    57   2e-08
Medtr5g088760.3 | negative cofactor 2 transcriptional co-repress...    55   9e-08
Medtr3g085430.1 | nuclear transcription factor Y protein | HC | ...    53   3e-07

>Medtr7g113680.1 | nuclear transcription factor Y protein | HC |
           chr7:46853507-46850661 | 20130731
          Length = 311

 Score =  383 bits (984), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/243 (79%), Positives = 197/243 (81%), Gaps = 3/243 (1%)

Query: 1   MDHQGHGQNPSMGGVGSGGQLTYGSNPYQPNQMTGAPGAVVTSVGNMPSTGQPAGAQMGX 60
           MDHQGH QNP MG VGSG Q+ YGSNPYQ NQMTGAPG+VVTSVG M STGQPAGAQ+G 
Sbjct: 52  MDHQGHNQNPQMGVVGSGSQMPYGSNPYQSNQMTGAPGSVVTSVGGMQSTGQPAGAQLGQ 111

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIEKVTDFKNHSLPLARIKKIMKADEDVRMI 120
                                        EIEKVTDFKNHSLPLARIKKIMKADEDVRMI
Sbjct: 112 HQLAYQHIHQQQQQQLQQQLQSFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMI 171

Query: 121 SAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE 180
           SAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE
Sbjct: 172 SAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE 231

Query: 181 DLKDEVLASIPRGSMPVAGPGDALPYCYGMPQ---QVGPAGVIMGKPVMDPNMYAQQSHP 237
           DLKDEVLASIPRG+MPVAGP DALPYCY  PQ   QVG AGVIMGKPVMDPNMYAQQ HP
Sbjct: 232 DLKDEVLASIPRGTMPVAGPADALPYCYMPPQHASQVGTAGVIMGKPVMDPNMYAQQPHP 291

Query: 238 YMA 240
           YMA
Sbjct: 292 YMA 294


>Medtr1g082660.1 | nuclear transcription factor Y protein | HC |
           chr1:36798252-36800703 | 20130731
          Length = 256

 Score =  327 bits (838), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 170/243 (69%), Positives = 180/243 (74%), Gaps = 7/243 (2%)

Query: 1   MDHQGHGQNPSMGGVGSGGQLTYGSNPYQPNQMTGAPGAVVTSVGNMPSTGQPAGAQMGX 60
           MDHQGHGQNP+MG VGSG    YGSNPYQPN MTG+PG VV SVG +   GQP G Q+G 
Sbjct: 1   MDHQGHGQNPNMGVVGSGQMAPYGSNPYQPNPMTGSPGMVVPSVGTIQPGGQPDGTQLGQ 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIEKVTDFKNHSLPLARIKKIMKADEDVRMI 120
                                        EIEKVTDFKNHSLPLARIKKIMKADEDV+MI
Sbjct: 61  HQLAYQHIHQQQQQQQQQQLQTFWGNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMI 120

Query: 121 SAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE 180
           SAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT TDIFDFLVDIVPRE
Sbjct: 121 SAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPRE 180

Query: 181 DLKDEVLASIPRGSMPVAGPGDALPYCYGMP---QQVGPAGVIMGKPVMDPNMYAQQSHP 237
           DLKDEVLASIPRG MPV GP D +PYCY  P   QQ G  G++M     +PNMYA QSHP
Sbjct: 181 DLKDEVLASIPRGPMPVGGPADGIPYCYMPPQNAQQAGNPGLMM----HNPNMYAPQSHP 236

Query: 238 YMA 240
           YMA
Sbjct: 237 YMA 239


>Medtr1g082660.2 | nuclear transcription factor Y protein | HC |
           chr1:36798518-36800703 | 20130731
          Length = 256

 Score =  327 bits (838), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 170/243 (69%), Positives = 180/243 (74%), Gaps = 7/243 (2%)

Query: 1   MDHQGHGQNPSMGGVGSGGQLTYGSNPYQPNQMTGAPGAVVTSVGNMPSTGQPAGAQMGX 60
           MDHQGHGQNP+MG VGSG    YGSNPYQPN MTG+PG VV SVG +   GQP G Q+G 
Sbjct: 1   MDHQGHGQNPNMGVVGSGQMAPYGSNPYQPNPMTGSPGMVVPSVGTIQPGGQPDGTQLGQ 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIEKVTDFKNHSLPLARIKKIMKADEDVRMI 120
                                        EIEKVTDFKNHSLPLARIKKIMKADEDV+MI
Sbjct: 61  HQLAYQHIHQQQQQQQQQQLQTFWGNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMI 120

Query: 121 SAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE 180
           SAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT TDIFDFLVDIVPRE
Sbjct: 121 SAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPRE 180

Query: 181 DLKDEVLASIPRGSMPVAGPGDALPYCYGMP---QQVGPAGVIMGKPVMDPNMYAQQSHP 237
           DLKDEVLASIPRG MPV GP D +PYCY  P   QQ G  G++M     +PNMYA QSHP
Sbjct: 181 DLKDEVLASIPRGPMPVGGPADGIPYCYMPPQNAQQAGNPGLMM----HNPNMYAPQSHP 236

Query: 238 YMA 240
           YMA
Sbjct: 237 YMA 239


>Medtr3g099180.1 | nuclear transcription factor Y protein | HC |
           chr3:45466751-45470003 | 20130731
          Length = 217

 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/139 (69%), Positives = 112/139 (80%), Gaps = 8/139 (5%)

Query: 90  EIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEE 149
           EIE V DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EE
Sbjct: 44  EIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEE 103

Query: 150 NKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGSMPVAGPGDALPYCYG 209
           NKRRTLQKNDIAAAITRTDIFDFLVDIVPR+++KDE  A+I      V      +PY Y 
Sbjct: 104 NKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEGAAAI------VGAAASGVPYYY- 156

Query: 210 MPQQVGPAGVIMGKPVMDP 228
            P    PAG+++G+P +DP
Sbjct: 157 -PPMGQPAGMMIGRPAVDP 174


>Medtr3g099180.2 | nuclear transcription factor Y protein | HC |
           chr3:45466714-45470003 | 20130731
          Length = 218

 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/139 (69%), Positives = 112/139 (80%), Gaps = 8/139 (5%)

Query: 90  EIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEE 149
           EIE V DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EE
Sbjct: 44  EIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEE 103

Query: 150 NKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGSMPVAGPGDALPYCYG 209
           NKRRTLQKNDIAAAITRTDIFDFLVDIVPR+++KDE  A+I      V      +PY Y 
Sbjct: 104 NKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEGAAAI------VGAAASGVPYYY- 156

Query: 210 MPQQVGPAGVIMGKPVMDP 228
            P    PAG+++G+P +DP
Sbjct: 157 -PPMGQPAGMMIGRPAVDP 174


>Medtr2g023340.1 | core histone H2A/H2B/H3/H4 | LC |
           chr2:8235750-8235016 | 20130731
          Length = 244

 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/160 (51%), Positives = 111/160 (69%), Gaps = 23/160 (14%)

Query: 90  EIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEE 149
           E+EKV DF+N+ LPLARIKKIMKA+E V MISAEAP++FA+ACEMFI+EL  RSW + E 
Sbjct: 74  EVEKVVDFRNNGLPLARIKKIMKAEEGVSMISAEAPILFAKACEMFIMELATRSWANAEV 133

Query: 150 NKRRTLQKNDIAAAITRTDIFDFLVDIVPRED-LKDEVLASIPRGSMPVAGPGDALPYCY 208
           NKR+TLQK+DIA+A++  ++FDFLVDIVPRE+ ++ ++   IPR         + +PY  
Sbjct: 134 NKRKTLQKSDIASAVSSNEVFDFLVDIVPRENTMERDIFMGIPR--------RENVPYYL 185

Query: 209 GMPQQV----------GPAGVIMGKPVMDPNMYAQQSHPY 238
            MP  V          GPAG++MG+ +  PN     SHP+
Sbjct: 186 PMPVHVPPQYAAGPSYGPAGMLMGRHL--PNQ--PPSHPF 221


>Medtr2g081600.1 | nuclear transcription factor Y protein | HC |
           chr2:34243690-34243268 | 20130731
          Length = 119

 Score =  111 bits (278), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 66/87 (75%), Gaps = 1/87 (1%)

Query: 100 HSLPLARIKKIMK-ADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKN 158
           HSLPLARIKKIMK + EDV+MIS  AP++F++ACE+FI ELT RSW    + KRRTL K 
Sbjct: 21  HSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIEELTRRSWIMAIDAKRRTLNKE 80

Query: 159 DIAAAITRTDIFDFLVDIVPREDLKDE 185
           D+A+A+  TDIFDFL+ +V   D  D+
Sbjct: 81  DVASAVIATDIFDFLITLVSNSDSTDD 107


>Medtr2g081630.1 | nuclear transcription factor Y protein | HC |
           chr2:34260235-34259869 | 20130731
          Length = 117

 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 64/83 (77%), Gaps = 1/83 (1%)

Query: 100 HSLPLARIKKIMK-ADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKN 158
           HSLPLARIKKIMK + EDV+MIS  AP++F++ACE+FI ELT RSW    + KRRTL K 
Sbjct: 21  HSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIEELTRRSWIMAIDAKRRTLNKE 80

Query: 159 DIAAAITRTDIFDFLVDIVPRED 181
           D+A+A+  TDIFDFL+ +V   D
Sbjct: 81  DVASAVIATDIFDFLITLVSNSD 103


>Medtr3g012030.2 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr3:3186291-3181373 | 20130731
          Length = 292

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 48/78 (61%)

Query: 102 LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 161
            P ARIKKIM+ADEDV  I+   PV+ ++A E+F+ +L  R++  T +   +T+    + 
Sbjct: 9   FPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLK 68

Query: 162 AAITRTDIFDFLVDIVPR 179
             +   ++FDFL DIV R
Sbjct: 69  HCVQSYNVFDFLRDIVSR 86


>Medtr8g041420.1 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr8:15595067-15590978 | 20130731
          Length = 305

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%)

Query: 102 LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 161
            P ARIKKIM+ADEDV  I+   PV+ ++A E+F+ +L  R++  T +   +T+    + 
Sbjct: 9   FPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLK 68

Query: 162 AAITRTDIFDFLVDIVPR 179
             +   ++FDFL D+V +
Sbjct: 69  HCVQSYNVFDFLKDVVSK 86


>Medtr5g088760.2 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr5:38540164-38543606 | 20130731
          Length = 302

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 102 LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 161
            P ARIKKIM+ADED+  I+   P++ ++A E+F+ +L  R++  T     +T+    + 
Sbjct: 9   FPAARIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLGRGAKTVNAFHLK 68

Query: 162 AAITRTDIFDFLVDIVPR 179
             I   ++FDFL D V +
Sbjct: 69  QCIQTCNVFDFLKDTVSK 86


>Medtr5g088760.3 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr5:38540164-38543606 | 20130731
          Length = 293

 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 45/75 (60%)

Query: 105 ARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAI 164
           ARIKKIM+ADED+  I+   P++ ++A E+F+ +L  R++  T     +T+    +   I
Sbjct: 3   ARIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLGRGAKTVNAFHLKQCI 62

Query: 165 TRTDIFDFLVDIVPR 179
              ++FDFL D V +
Sbjct: 63  QTCNVFDFLKDTVSK 77


>Medtr3g085430.1 | nuclear transcription factor Y protein | HC |
           chr3:38611793-38612780 | 20130731
          Length = 173

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 90  EIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEE 149
           E EK   F+    P +R+KKI+  D+DV+ +S+EA  + +R+ E+F+  L  +S     E
Sbjct: 21  EEEKTLSFEPE-FPKSRVKKIITLDKDVKRVSSEALFLVSRSTELFLQLLAEKSAEVAIE 79

Query: 150 NKRRTLQKNDIAAAITRTD-IFDFLVDIVP 178
            KR+T++   +  A+ R   I DFL+D +P
Sbjct: 80  KKRKTVKLEHMRIAVKRNRPISDFLLDSLP 109