Miyakogusa Predicted Gene

Lj1g3v4931460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4931460.1 Non Characterized Hit- tr|I3SCH1|I3SCH1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,70.49,1e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.33637.1
         (183 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g101600.1 | tetraspanin family protein | HC | chr8:4270409...    96   2e-20
Medtr8g066790.1 | tetraspanin family protein | HC | chr8:2777798...    73   2e-13
Medtr5g030070.1 | tetraspanin family protein | HC | chr5:1263909...    59   3e-09
Medtr4g129670.1 | tetraspanin family protein | HC | chr4:5404116...    49   3e-06

>Medtr8g101600.1 | tetraspanin family protein | HC |
           chr8:42704090-42701405 | 20130731
          Length = 269

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 51/61 (83%)

Query: 97  LFPGRGYRESRLDGFSAWLRNHVTGSRSWNRIRTCLADSDVCIKLTQDYITANQFFNSRI 156
           + P RGY+E RLDGFS+WLR+ VTGS SW +I  CLA SDVCIKLTQ+YITA+QFFNS I
Sbjct: 103 VVPDRGYKEFRLDGFSSWLRHRVTGSGSWRKIMPCLAASDVCIKLTQNYITADQFFNSHI 162

Query: 157 T 157
           +
Sbjct: 163 S 163


>Medtr8g066790.1 | tetraspanin family protein | HC |
           chr8:27777981-27780805 | 20130731
          Length = 269

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 8/164 (4%)

Query: 1   MGVSNNITAVVNFIALMASIPIIASGVSCVASLQARQRVXXXX-----XXXXXXXXXXXX 55
           M +SNN+  ++NFIA++ SIPII +G+  +++LQA   V                     
Sbjct: 1   MALSNNVIGIINFIAVLLSIPIIGAGIW-LSTLQAESCVKILQWPVIILGILILIVGMVG 59

Query: 56  XXXNWLRRXXXXXXXXXXXXXXXXXXXXXRLCIYSYSTRWK--LFPGRGYRESRLDGFSA 113
               + R                       + +YS + R    + P R Y E R+D FS 
Sbjct: 60  FIGAFWRIPMLLIFYLIAMIVLIVLLGSLVIFVYSVTLRGHGNIEPNRSYLEYRVDDFSF 119

Query: 114 WLRNHVTGSRSWNRIRTCLADSDVCIKLTQDYITANQFFNSRIT 157
           WLR  V  S  W+ I++CL+ S++C +L Q Y  A  FFN+ ++
Sbjct: 120 WLRRRVRSSHKWDGIKSCLSSSNMCAELNQSYRIAQDFFNAHLS 163


>Medtr5g030070.1 | tetraspanin family protein | HC |
           chr5:12639094-12641293 | 20130731
          Length = 269

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%)

Query: 99  PGRGYRESRLDGFSAWLRNHVTGSRSWNRIRTCLADSDVCIKLTQDYITANQFFNSRIT 157
           P R Y E RLD FS +L+  V  S  W+ IR+CL+ +++C +L Q +  A  FFN+R+T
Sbjct: 105 PNRAYLEYRLDDFSGFLKRRVRSSFKWDAIRSCLSQTNMCGELNQSFRMAQDFFNARLT 163


>Medtr4g129670.1 | tetraspanin family protein | HC |
           chr4:54041164-54038606 | 20130731
          Length = 266

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 101 RGYRESRLDGFSAWLRNHVTGSRSWNRIRTCLADSDVCIKLTQDYI--TANQFF 152
           +GY+E RL  +S WL+  V  + +WNRI++CL    +CI     ++  TA++F+
Sbjct: 107 KGYKEYRLGDYSNWLQKRVNDNGNWNRIKSCLQSGKLCIDFHSQFLNDTADKFY 160