Miyakogusa Predicted Gene

Lj1g3v4931160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4931160.1 Non Characterized Hit- tr|I3T2E9|I3T2E9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,90.91,0.000000000000001,DUF543,Protein of unknown function
DUF543; seg,NULL,CUFF.33631.1
         (73 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g005050.1 | DUF543 domain protein | HC | chr3:23553-15559 ...    68   2e-12
Medtr3g005050.2 | DUF543 domain protein | HC | chr3:23553-16884 ...    67   3e-12

>Medtr3g005050.1 | DUF543 domain protein | HC | chr3:23553-15559 |
          20130731
          Length = 98

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 37/45 (82%), Gaps = 1/45 (2%)

Query: 1  MADNKE-IIPPQYGLDAKWDACLDLTVCRFVFSSFVGALGGLLFF 44
          M +NKE +IP +Y +DAKWDACLDLTV RFV+SSF GA GGLL F
Sbjct: 1  MGENKEELIPQKYDVDAKWDACLDLTVRRFVYSSFAGAFGGLLLF 45


>Medtr3g005050.2 | DUF543 domain protein | HC | chr3:23553-16884 |
          20130731
          Length = 99

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 37/45 (82%), Gaps = 1/45 (2%)

Query: 1  MADNKE-IIPPQYGLDAKWDACLDLTVCRFVFSSFVGALGGLLFF 44
          M +NKE +IP +Y +DAKWDACLDLTV RFV+SSF GA GGLL F
Sbjct: 1  MGENKEELIPQKYDVDAKWDACLDLTVRRFVYSSFAGAFGGLLLF 45