Miyakogusa Predicted Gene

Lj1g3v4919900.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4919900.1 Non Characterized Hit- tr|I0YUM6|I0YUM6_9CHLO
Uncharacterized protein (Fragment) OS=Coccomyxa
subell,51.04,0.000000000000006,Rad9,Rad9/Ddc1; seg,NULL; SUBFAMILY NOT
NAMED,NULL; DNA REPAIR PROTEIN RAD9,Rad9,CUFF.33611.1
         (302 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g113100.1 | cell cycle checkpoint control RAD9A-like prote...   492   e-139

>Medtr7g113100.1 | cell cycle checkpoint control RAD9A-like protein
           | HC | chr7:46551446-46547412 | 20130731
          Length = 450

 Score =  492 bits (1267), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/302 (77%), Positives = 255/302 (84%)

Query: 1   MNRLLSNFQSSLQEITVIATEPASLPPDSANDIGGKAVELRSYIDPTKDNDSSLHTQLWI 60
           +NRLL+NFQSSLQEIT+IATEPAS+PPDS N+IGGKAVELRSYIDPTKDNDS LHTQLWI
Sbjct: 148 LNRLLANFQSSLQEITIIATEPASVPPDSENEIGGKAVELRSYIDPTKDNDSLLHTQLWI 207

Query: 61  DPKEEFLQYVHTGDPIDVTFSVKELKAFLSFCEGCEVDIHFHFEKAGEPILMAPKFGLED 120
           DPKEEFLQYVH GDP+DVTFSVKELKAFLSFCEGCE+DIH HFEK GEPILM PKFGLED
Sbjct: 208 DPKEEFLQYVHNGDPVDVTFSVKELKAFLSFCEGCEIDIHLHFEKTGEPILMTPKFGLED 267

Query: 121 GSHSNFDATLVLATMLTSQLHEGAASEPLVVDARTHAQTEERNGSHAEEENCRTNTSELQ 180
           GSHSNFDATLVLATMLTSQLHEGAASEP VV  RTHAQTEERN S  ++ENCRTN SEL 
Sbjct: 268 GSHSNFDATLVLATMLTSQLHEGAASEPPVVATRTHAQTEERNESPLQQENCRTNASELP 327

Query: 181 SDHTRVWSDLSATAVKNMSGLEERPAQEQTVLNDNEQREIQRISTIRISRKTSAAGNNPT 240
           SDHTR+WSDLSATA KN+SG+EER AQE T LNDNEQR+IQRIST++I+R    AGNNP 
Sbjct: 328 SDHTRIWSDLSATAAKNVSGMEERQAQEGTTLNDNEQRDIQRISTVKITRGKLFAGNNPI 387

Query: 241 GSNICRPTEKDSVQAPQDMLQDNNQAFSQHHPSNWVXXXXXXXXXXXXXXQYIQATPPYY 300
            SN C P+E D VQ PQDML +N Q FSQHHPSNWV               YIQATPPYY
Sbjct: 388 DSNFCPPSENDHVQEPQDMLPNNGQPFSQHHPSNWVDAEEDDEDDADEEEPYIQATPPYY 447

Query: 301 ED 302
           ++
Sbjct: 448 DE 449