Miyakogusa Predicted Gene

Lj1g3v4919810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4919810.1 tr|C1DYW4|C1DYW4_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_55804
,31.34,0.000000000007,seg,NULL,CUFF.33603.1
         (342 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g112650.1 | hypothetical protein | HC | chr7:46339586-4634...   447   e-126

>Medtr7g112650.1 | hypothetical protein | HC |
           chr7:46339586-46344289 | 20130731
          Length = 331

 Score =  447 bits (1150), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/297 (72%), Positives = 249/297 (83%), Gaps = 9/297 (3%)

Query: 50  IPKATPXXXXXXXXXXXXXQTVNPAVARHLKSCLKFLVPFSP----PEPRHRKLGLGRAG 105
           IPKATP             + VNP VAR LKSCLKFLVPFSP      PRHRKLG     
Sbjct: 40  IPKATPSDLLSLLGPTPHSKLVNPVVARQLKSCLKFLVPFSPTVTDSPPRHRKLG----R 95

Query: 106 TSLTGATGRDTANNLIWFPPEPVLDLARIAVDSGGDPAAIQRALDPTIIPVPDVEGSNKN 165
           + LTG+  R+  N++IW+PPEPVL+LAR+AVDS GDPAA+ RALDPT+IPVPDVEGSN++
Sbjct: 96  SELTGSNRRND-NDMIWWPPEPVLELARLAVDSSGDPAAVHRALDPTVIPVPDVEGSNED 154

Query: 166 RCQLTRTPYGRHFISQELNLYLKFLFELIADRAPSVGFKVSLNRFDLFHGHMFLAVDTGR 225
           RC LTRTPYGR FIS+ELN+Y++FLFELI DR PS+GF V+LNR+DLFHGH+FL++ +GR
Sbjct: 155 RCHLTRTPYGRRFISEELNMYMQFLFELIVDRGPSIGFDVALNRYDLFHGHLFLSIHSGR 214

Query: 226 LGILFHAREYPAYDEQVFPYNLGFCQKGTNVTYDDSMNLRNILWLAPLPGDSAKSWLAPG 285
           LG+LFHAREYPAYD++VFPYN+GFCQ+G+NVTYDDSMNLRNILWLAPLP +S KSW+APG
Sbjct: 215 LGVLFHAREYPAYDKKVFPYNMGFCQRGSNVTYDDSMNLRNILWLAPLPDNSTKSWVAPG 274

Query: 286 VLVVLDARPDGIIYRDLIPDYVDFARTIYEDDLGNCAVDVNYLNVGSETGNYQLFIC 342
           VLVVLDARPDGIIYRDLIPDYV  ARTIYEDDLG  AVDVN LNVGS++ NYQ+FIC
Sbjct: 275 VLVVLDARPDGIIYRDLIPDYVKIARTIYEDDLGEVAVDVNILNVGSQSQNYQIFIC 331