Miyakogusa Predicted Gene

Lj1g3v4899060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4899060.1 Non Characterized Hit- tr|I1NBY0|I1NBY0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9498
PE=,50,3e-19,seg,NULL; RALF,Rapid ALkalinization Factor,CUFF.33546.1
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g108600.1 | RALF | HC | chr7:44243799-44244426 | 20130731       151   2e-37
Medtr7g113080.1 | RALF | HC | chr7:46543813-46542730 | 20130731       114   3e-26
Medtr4g119860.1 | RALF | HC | chr4:49670930-49671709 | 20130731       105   1e-23
Medtr3g084350.1 | RALF | HC | chr3:38084747-38083816 | 20130731        74   4e-14
Medtr4g088685.1 | RALF | HC | chr4:35293923-35294506 | 20130731        70   5e-13
Medtr6g060260.1 | RALF | HC | chr6:20717142-20716825 | 20130731        63   8e-11
Medtr8g083150.1 | RALF | HC | chr8:35115964-35116888 | 20130731        46   9e-06

>Medtr7g108600.1 | RALF | HC | chr7:44243799-44244426 | 20130731
          Length = 118

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 88/111 (79%), Gaps = 7/111 (6%)

Query: 14  MVAMSIFSPSTASAIGEHHQLWWVHMTTPPPPCQGSIEECIAASGEFGMESSEPESHRRI 73
           MV+ SIF P+T+SA GEHH  W   MTTP   CQGSIEECI   GEFGM S   ESHRRI
Sbjct: 15  MVSTSIF-PATSSATGEHHLRWVAPMTTPT--CQGSIEECIE-EGEFGMNS---ESHRRI 67

Query: 74  LATSQYISYRALQRNTVPCSRKGASYYNCKGGAEANPYNRGCPTITRCRTT 124
           LAT+ YISYRALQRNTVPCS KGASYYNC+ GAEANPY+RGC TITRCR +
Sbjct: 68  LATTHYISYRALQRNTVPCSHKGASYYNCQTGAEANPYSRGCATITRCRNS 118


>Medtr7g113080.1 | RALF | HC | chr7:46543813-46542730 | 20130731
          Length = 127

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 76/110 (69%), Gaps = 3/110 (2%)

Query: 14  MVAMSIFSPSTASAIG-EHHQLWWVHMTTPPPPCQGSIEECIAASGEFGMESSEPESHRR 72
           M  M   SP+  +A G E   + W+H T     C+GSI +C+   GE   +  + E +RR
Sbjct: 19  MTTMMSSSPTVDAAGGFELGGMEWIHQT-KTATCEGSIADCMLQQGEEEFQF-DNEINRR 76

Query: 73  ILATSQYISYRALQRNTVPCSRKGASYYNCKGGAEANPYNRGCPTITRCR 122
           ILAT++YISY ALQRNTVPCSR+GASYYNC+ GA+ANPY+RGC  ITRCR
Sbjct: 77  ILATTKYISYGALQRNTVPCSRRGASYYNCRPGAQANPYSRGCSAITRCR 126


>Medtr4g119860.1 | RALF | HC | chr4:49670930-49671709 | 20130731
          Length = 126

 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 76/114 (66%), Gaps = 9/114 (7%)

Query: 14  MVAMSIFSPSTASAIGEHHQLWWVHMTTPPPPCQGSIEECIAASG-----EFGMESSEPE 68
           ++A+ +   S+++     +QL    + +    C+GSI EC   +G     EF M+S   E
Sbjct: 16  ILALHVALSSSSTLDFTDNQLSSFFLPSDSG-CRGSIAECSLLAGDEDDSEFMMDS---E 71

Query: 69  SHRRILATSQYISYRALQRNTVPCSRKGASYYNCKGGAEANPYNRGCPTITRCR 122
           S+RRILA  +YISY AL+RNTVPCSR+GASYYNC+ GA+ANPY RGC  ITRCR
Sbjct: 72  SNRRILAARRYISYGALRRNTVPCSRRGASYYNCRPGAQANPYRRGCSAITRCR 125


>Medtr3g084350.1 | RALF | HC | chr3:38084747-38083816 | 20130731
          Length = 135

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 5/77 (6%)

Query: 46  CQGSIEECIAASGEFGMESSEPESHRRILAT-SQYISYRALQRNTVPCSRKGASYYNCKG 104
           C  +I EC+       M+S   ES+RR+LA   +YISY  L+R+ VPC R GASYYNC  
Sbjct: 54  CTKTIGECLTDPEMMMMDS---ESNRRVLAMQKKYISYDTLKRDMVPCDRPGASYYNCH- 109

Query: 105 GAEANPYNRGCPTITRC 121
             +ANPY+RGC  IT C
Sbjct: 110 RRQANPYSRGCEVITAC 126


>Medtr4g088685.1 | RALF | HC | chr4:35293923-35294506 | 20130731
          Length = 111

 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 5/77 (6%)

Query: 50  IEECIAASGEFGMESSEPESHRRILA--TSQYISYRALQRNTVPCSRKGASYYNCKGGAE 107
           + + I    E  M+S   ES+RR LA    +YISY AL+ N +PC +KG SYY+C    +
Sbjct: 37  VGDLIGDDNEMLMDS---ESNRRTLAGRKRRYISYGALKANNIPCGQKGQSYYDCNARGQ 93

Query: 108 ANPYNRGCPTITRCRTT 124
           ANPY RGC  IT C  T
Sbjct: 94  ANPYRRGCTAITHCART 110


>Medtr6g060260.1 | RALF | HC | chr6:20717142-20716825 | 20130731
          Length = 105

 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 10/85 (11%)

Query: 37  VHMTTPPPPCQGSIEECIAASGEFGMESSEPESHRRILATSQYISYRALQRNTVPCSRKG 96
           VH  + P P    + + I    E  M+S   ES+RR     +YISY AL  +++PC  KG
Sbjct: 27  VHDFSFPSPVL--VGDLIREENEMLMDS---ESNRR-----RYISYDALLADSIPCGLKG 76

Query: 97  ASYYNCKGGAEANPYNRGCPTITRC 121
            SYY+C    + NPY RGC  IT C
Sbjct: 77  QSYYDCNHRDQVNPYRRGCTAITHC 101


>Medtr8g083150.1 | RALF | HC | chr8:35115964-35116888 | 20130731
          Length = 119

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 46  CQGSIEECIAASGEFGMESSEPESHRRILATSQYISYRALQRNTVPCSR-KGASYYNCKG 104
           C GSI EC     +  MES   E  RR L   +YIS  AL+R+   C+   G   Y+   
Sbjct: 40  CNGSIAECNQEDEQL-MES---EISRRFLEQRRYISEGALKRDKPVCNGGAGGEAYSKSA 95

Query: 105 GA---EANPYNRGCPTITRCRTTS 125
           G     +NPYNRGC    RCR+ S
Sbjct: 96  GCIPPPSNPYNRGCSKYYRCRSDS 119