Miyakogusa Predicted Gene

Lj1g3v4885920.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4885920.2 tr|G7LBZ8|G7LBZ8_MEDTR Pre-mRNA-splicing factor
SF2 OS=Medicago truncatula GN=MTR_8g058530 PE=4 SV=1,89.68,0,RRM_1,RNA
recognition motif domain; RRM,RNA recognition motif domain; SPLICING
FACTOR, ARGININE/SERI,CUFF.33534.2
         (315 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC...   299   2e-81
Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC...   298   3e-81
Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC...   257   8e-69
Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC...   257   1e-68
Medtr1g083400.1 | pre-mRNA-splicing factor SF2-like protein | HC...   257   1e-68
Medtr1g088180.1 | ASF/SF2-like pre-mRNA splicing factor SRP32, p...   243   1e-64
Medtr3g092580.1 | pre-mRNA-splicing factor SF2-like protein | HC...   242   3e-64
Medtr8g027190.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    63   4e-10
Medtr8g027190.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    63   4e-10
Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    60   4e-09
Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein...    58   1e-08
Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    58   1e-08
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    53   4e-07
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    53   4e-07
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    52   6e-07
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    52   6e-07
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein...    52   6e-07
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein...    52   6e-07
Medtr4g068120.2 | flowering time control FPA-like protein | HC |...    52   7e-07
Medtr4g068120.1 | flowering time control FPA-like protein | HC |...    52   7e-07
Medtr3g079310.1 | RNA recognition motif (RRM) containing protein...    52   7e-07
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c...    52   9e-07
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-...    50   3e-06

>Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr8:20148291-20144393 | 20130731
          Length = 303

 Score =  299 bits (766), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 146/187 (78%), Positives = 154/187 (82%)

Query: 1   MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
           MSR +SRTVYVGNLPGDIREREVEDLF KYG+ITHIDLKVPPRPPGYAFVEFED QDAED
Sbjct: 1   MSRHSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVSGLPS 120
           AIRGRDGYDFDGHRLRVE AH                            EYRV+V+GLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPS 120

Query: 121 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSEFRNAFSRG 180
           SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTN+DDMKYA+KKLDDSEFRNAFS+ 
Sbjct: 121 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKS 180

Query: 181 YVRVRQY 187
           YVRVR+Y
Sbjct: 181 YVRVREY 187


>Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr7:44331530-44321717 | 20130731
          Length = 401

 Score =  298 bits (764), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 146/187 (78%), Positives = 154/187 (82%)

Query: 1   MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
           MSR +SRTVYVGNLPGDIREREVEDLF KYG+ITHIDLKVPPRPPGYAFVEFED QDAED
Sbjct: 102 MSRHSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAED 161

Query: 61  AIRGRDGYDFDGHRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVSGLPS 120
           AIRGRDGYDFDGHRLRVE AH                            EYRV+V+GLPS
Sbjct: 162 AIRGRDGYDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPS 221

Query: 121 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSEFRNAFSRG 180
           SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTN+DDMKYA+KKLDDSEFRNAFS+ 
Sbjct: 222 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKS 281

Query: 181 YVRVRQY 187
           YVRVR+Y
Sbjct: 282 YVRVREY 288


>Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr7:46405206-46401029 | 20130731
          Length = 252

 Score =  257 bits (657), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 129/187 (68%), Positives = 144/187 (77%), Gaps = 2/187 (1%)

Query: 1   MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
           MSRR+SRT+YVGNLPGDIR REVEDLFYK+G I  I+LK+PPRPPGYAFVEFED +DAED
Sbjct: 1   MSRRSSRTIYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVSGLPS 120
           AIR RDGY FDG RLRVELAH                            EYRVLV+GLP 
Sbjct: 61  AIRYRDGYKFDGFRLRVELAHGGRGYSSSVDRYSSYSSGSRGVSKHS--EYRVLVTGLPP 118

Query: 121 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSEFRNAFSRG 180
           SASWQDLKDHMR+AGDVCFSQVF D  G TGIV+YTN++DMKYA++KLDDSEFRNAFS  
Sbjct: 119 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVEYTNYEDMKYAIRKLDDSEFRNAFSWA 178

Query: 181 YVRVRQY 187
           Y+RVR+Y
Sbjct: 179 YIRVREY 185


>Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr7:46405226-46398545 | 20130731
          Length = 292

 Score =  257 bits (657), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 129/187 (68%), Positives = 144/187 (77%), Gaps = 2/187 (1%)

Query: 1   MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
           MSRR+SRT+YVGNLPGDIR REVEDLFYK+G I  I+LK+PPRPPGYAFVEFED +DAED
Sbjct: 1   MSRRSSRTIYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAED 60

Query: 61  AIRGRDGYDFDGHRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVSGLPS 120
           AIR RDGY FDG RLRVELAH                            EYRVLV+GLP 
Sbjct: 61  AIRYRDGYKFDGFRLRVELAHGGRGYSSSVDRYSSYSSGSRGVSKHS--EYRVLVTGLPP 118

Query: 121 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSEFRNAFSRG 180
           SASWQDLKDHMR+AGDVCFSQVF D  G TGIV+YTN++DMKYA++KLDDSEFRNAFS  
Sbjct: 119 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVEYTNYEDMKYAIRKLDDSEFRNAFSWA 178

Query: 181 YVRVRQY 187
           Y+RVR+Y
Sbjct: 179 YIRVREY 185


>Medtr1g083400.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr1:37124801-37119597 | 20130731
          Length = 290

 Score =  257 bits (657), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/187 (67%), Positives = 143/187 (76%)

Query: 1   MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
           MS R+SRT+YVGNLPGDIR REVEDLFYKYG I  IDLK+PP+PPGYAFVEFED +DA+D
Sbjct: 32  MSGRSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQD 91

Query: 61  AIRGRDGYDFDGHRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVSGLPS 120
           AI  RDGYDFDG+RL VELAH                            +YRVLV+GLP 
Sbjct: 92  AIYYRDGYDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPP 151

Query: 121 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSEFRNAFSRG 180
           SASWQDLKDHMRKAG VCFSQVF +  G TGIVDYTN+DD+KYA++KLDDSEFRNAFSR 
Sbjct: 152 SASWQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKYAIRKLDDSEFRNAFSRS 211

Query: 181 YVRVRQY 187
           Y+RVR+Y
Sbjct: 212 YIRVREY 218


>Medtr1g088180.1 | ASF/SF2-like pre-mRNA splicing factor SRP32,
           putative | LC | chr1:39411452-39402479 | 20130731
          Length = 448

 Score =  243 bits (621), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 126/187 (67%), Positives = 135/187 (72%)

Query: 1   MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
           MSR  SRTVYVGNLPGDIREREV+ LF KYG+IT IDLKVPPRPP YAFV F+D  +A+D
Sbjct: 1   MSRHLSRTVYVGNLPGDIREREVKHLFMKYGHITRIDLKVPPRPPCYAFVVFKDALNADD 60

Query: 61  AIRGRDGYDFDGHRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVSGLPS 120
           AI   DGYDFDG RLRVE AH                            EYRVLV+ LPS
Sbjct: 61  AICECDGYDFDGCRLRVEAAHVGYCNSSSRDRYSIHSNGQGGRGVSSHSEYRVLVNRLPS 120

Query: 121 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSEFRNAFSRG 180
           SAS QDLKDHMRKAG VCFSQV HDGR TTGIVDYTN DDMKYA+K LD SEF+NAFSR 
Sbjct: 121 SASCQDLKDHMRKAGAVCFSQVVHDGRVTTGIVDYTNCDDMKYAIKNLDGSEFQNAFSRS 180

Query: 181 YVRVRQY 187
           YV VR+Y
Sbjct: 181 YVHVREY 187


>Medtr3g092580.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr3:42306430-42301242 | 20130731
          Length = 380

 Score =  242 bits (618), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/199 (60%), Positives = 140/199 (70%), Gaps = 12/199 (6%)

Query: 1   MSRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAED 60
           MS R SRT+YVGNLP DIRE E+EDLFYKYG I  I+LKVPPRPP Y FVEF++ +DAED
Sbjct: 108 MSSRFSRTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAED 167

Query: 61  AIRGRDGYDFDGHRLRVELAH------------XXXXXXXXXXXXXXXXXXXXXXXXXXX 108
           AIRGRDGY+FDG RLRVELAH                                       
Sbjct: 168 AIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGRGGGGDSAGGGRFGVSRH 227

Query: 109 XEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKL 168
            E+RV+V GLPSSASWQDLKDHMRKAGDVCF++V  D  GT G+VDYTN+DDMKYA++KL
Sbjct: 228 SEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKL 287

Query: 169 DDSEFRNAFSRGYVRVRQY 187
           DD+EFRN ++R Y+RVR+Y
Sbjct: 288 DDTEFRNPWARSYIRVRKY 306


>Medtr8g027190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
          | HC | chr8:9557166-9560056 | 20130731
          Length = 249

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 7/76 (9%)

Query: 7  RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRD 66
          R V+ GNL  D R+ E+E LF KYG I  +D+K      G+AFV +ED +DAE+AIR  D
Sbjct: 2  RPVFAGNLEYDTRQSELERLFSKYGRIERVDMKS-----GFAFVYYEDERDAEEAIRALD 56

Query: 67 GYDF--DGHRLRVELA 80
             F  D  RL VE A
Sbjct: 57 NIPFGHDKRRLSVEWA 72


>Medtr8g027190.2 | RNA-binding (RRM/RBD/RNP motif) family protein
          | HC | chr8:9557166-9560056 | 20130731
          Length = 249

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 7/76 (9%)

Query: 7  RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRD 66
          R V+ GNL  D R+ E+E LF KYG I  +D+K      G+AFV +ED +DAE+AIR  D
Sbjct: 2  RPVFAGNLEYDTRQSELERLFSKYGRIERVDMKS-----GFAFVYYEDERDAEEAIRALD 56

Query: 67 GYDF--DGHRLRVELA 80
             F  D  RL VE A
Sbjct: 57 NIPFGHDKRRLSVEWA 72


>Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein
          | HC | chr1:45856698-45851996 | 20130731
          Length = 388

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 7  RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRD 66
          + ++ GN   D RE E+E LF +YG +  +D+K      G+AF+  ED +DAE AIR  D
Sbjct: 2  KAIFCGNFEYDCRESELERLFRRYGKVDRVDMKA-----GFAFIYMEDERDAEAAIRALD 56

Query: 67 GYDF--DGHRLRVE 78
            +F   G RLRVE
Sbjct: 57 RIEFGRKGRRLRVE 70


>Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein
          | HC | chr8:12497703-12493893 | 20130731
          Length = 294

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 7/74 (9%)

Query: 7  RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRD 66
          + ++ GNL  D R+ +VE LF KYG I  +DLK      G+AF+  ED +DAE AIR  D
Sbjct: 2  KPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKS-----GFAFIYMEDERDAEYAIRRLD 56

Query: 67 GYDF--DGHRLRVE 78
            +F   G R+RVE
Sbjct: 57 QTEFGRKGRRIRVE 70


>Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein
          | HC | chr8:12497703-12493893 | 20130731
          Length = 294

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 7/74 (9%)

Query: 7  RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDAIRGRD 66
          + ++ GNL  D R+ +VE LF KYG I  +DLK      G+AF+  ED +DAE AIR  D
Sbjct: 2  KPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKS-----GFAFIYMEDERDAEYAIRRLD 56

Query: 67 GYDF--DGHRLRVE 78
            +F   G R+RVE
Sbjct: 57 QTEFGRKGRRIRVE 70


>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:24700218-24705084 | 20130731
          Length = 311

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 6   SRTVYVGNLPGDIREREVEDLFYKYGNITHIDL---KVPPRPPGYAFVEFEDTQDAEDAI 62
           SR ++VGNLP  +   ++  LF + GN+  +++    +  R  G+AFV   + +DAE+AI
Sbjct: 107 SRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAI 166

Query: 63  RGRDGYDFDGHRLRVEL 79
           R  DG    G  ++V  
Sbjct: 167 RMFDGTTVGGRAIKVNF 183


>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:24700221-24703822 | 20130731
          Length = 311

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 6   SRTVYVGNLPGDIREREVEDLFYKYGNITHIDL---KVPPRPPGYAFVEFEDTQDAEDAI 62
           SR ++VGNLP  +   ++  LF + GN+  +++    +  R  G+AFV   + +DAE+AI
Sbjct: 107 SRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAI 166

Query: 63  RGRDGYDFDGHRLRVEL 79
           R  DG    G  ++V  
Sbjct: 167 RMFDGTTVGGRAIKVNF 183


>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:42489150-42483010 | 20130731
          Length = 477

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 7   RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPG-----YAFVEFEDTQDAEDA 61
           + VYV NLP +I +  +++LF  +G IT + L  PP   G     Y FV F D   A  A
Sbjct: 272 KAVYVKNLPENITQNRLKELFEHHGKITKVAL--PPAKAGQEKSRYGFVHFADRSSAMKA 329

Query: 62  IRGRDGYDFDGHRLRVELA 80
           ++  + Y+ +G  L   LA
Sbjct: 330 LKNTEKYEINGQTLECSLA 348


>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:42489150-42483010 | 20130731
          Length = 477

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 7   RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPG-----YAFVEFEDTQDAEDA 61
           + VYV NLP +I +  +++LF  +G IT + L  PP   G     Y FV F D   A  A
Sbjct: 272 KAVYVKNLPENITQNRLKELFEHHGKITKVAL--PPAKAGQEKSRYGFVHFADRSSAMKA 329

Query: 62  IRGRDGYDFDGHRLRVELA 80
           ++  + Y+ +G  L   LA
Sbjct: 330 LKNTEKYEINGQTLECSLA 348


>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:42488464-42483010 | 20130731
          Length = 477

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 7   RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPG-----YAFVEFEDTQDAEDA 61
           + VYV NLP +I +  +++LF  +G IT + L  PP   G     Y FV F D   A  A
Sbjct: 272 KAVYVKNLPENITQNRLKELFEHHGKITKVAL--PPAKAGQEKSRYGFVHFADRSSAMKA 329

Query: 62  IRGRDGYDFDGHRLRVELA 80
           ++  + Y+ +G  L   LA
Sbjct: 330 LKNTEKYEINGQTLECSLA 348


>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:42489150-42483010 | 20130731
          Length = 477

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 7/79 (8%)

Query: 7   RTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPG-----YAFVEFEDTQDAEDA 61
           + VYV NLP +I +  +++LF  +G IT + L  PP   G     Y FV F D   A  A
Sbjct: 272 KAVYVKNLPENITQNRLKELFEHHGKITKVAL--PPAKAGQEKSRYGFVHFADRSSAMKA 329

Query: 62  IRGRDGYDFDGHRLRVELA 80
           ++  + Y+ +G  L   LA
Sbjct: 330 LKNTEKYEINGQTLECSLA 348


>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
           chr4:25458538-25448035 | 20130731
          Length = 973

 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 29/168 (17%)

Query: 2   SRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDA 61
           S   S  +YV NL  D+ + ++ DLF +YG +   D         YAFV F+   DA+ A
Sbjct: 22  SSTPSNNLYVANLSPDVTDSDLMDLFVQYGAL---DSVTSYSARNYAFVFFKRIDDAKAA 78

Query: 62  IRGRDGYDFDGHRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVSGLPSS 121
                G++F G+ LR+E A                               ++ V G+  +
Sbjct: 79  KNALQGFNFRGNSLRIEFARPAKTCK------------------------QLWVGGISPA 114

Query: 122 ASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLD 169
            + +DL+   RK G V   + F D    T  V++ N DD   A+K ++
Sbjct: 115 VTKEDLEADFRKFGKVEDFKFFRD--RNTACVEFFNLDDAIQAMKIMN 160


>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
           chr4:25458538-25450507 | 20130731
          Length = 973

 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 29/168 (17%)

Query: 2   SRRTSRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPGYAFVEFEDTQDAEDA 61
           S   S  +YV NL  D+ + ++ DLF +YG +   D         YAFV F+   DA+ A
Sbjct: 22  SSTPSNNLYVANLSPDVTDSDLMDLFVQYGAL---DSVTSYSARNYAFVFFKRIDDAKAA 78

Query: 62  IRGRDGYDFDGHRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVSGLPSS 121
                G++F G+ LR+E A                               ++ V G+  +
Sbjct: 79  KNALQGFNFRGNSLRIEFARPAKTCK------------------------QLWVGGISPA 114

Query: 122 ASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLD 169
            + +DL+   RK G V   + F D    T  V++ N DD   A+K ++
Sbjct: 115 VTKEDLEADFRKFGKVEDFKFFRD--RNTACVEFFNLDDAIQAMKIMN 160


>Medtr3g079310.1 | RNA recognition motif (RRM) containing protein |
           HC | chr3:35657324-35668580 | 20130731
          Length = 928

 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)

Query: 6   SRTVYVGNLPGDIREREVEDLFYKYGNITHIDLKVPPRPPG--YAFVEFEDTQDAEDAIR 63
           SR ++VGNL  +I E E+   F ++G +  +  +     PG  YAF+ FE  +DA DA+R
Sbjct: 42  SRHLWVGNLSHNIVEDELAHPFIRFGPLEKVAFQ-----PGRSYAFINFEVDEDAIDAMR 96

Query: 64  GRDGYDFDGHRLRVELA 80
              G+   G+ LR+E A
Sbjct: 97  SLQGFLLAGNPLRIEFA 113


>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
           chr1:43879642-43873268 | 20130731
          Length = 572

 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)

Query: 7   RTVYVGNLPGDIREREVEDLFYKYGNITHIDL---KVPPRPPGYAFVEFEDTQDAEDAIR 63
           RTV+VGN+P D  E +++++  + G +    L   +   +P GY F E+ D + A  A R
Sbjct: 29  RTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARR 88

Query: 64  GRDGYDFDGHRLRVELA 80
              GY+ +G +LRV+ A
Sbjct: 89  NLQGYEINGRQLRVDFA 105


>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
           chr4:43224367-43221650 | 20130731
          Length = 300

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 9   VYVGNLPGDIREREVEDLFYKYGNITHIDL---KVPPRPPGYAFVEFEDTQDAEDAIRGR 65
            YVGNLP D+    +E LF ++G +    +   +   R  G+ FV   +  +  DAI   
Sbjct: 218 AYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAAL 277

Query: 66  DGYDFDGHRLRVELAH 81
           DG  F+G  +RV +A 
Sbjct: 278 DGQSFNGRAIRVNVAE 293