Miyakogusa Predicted Gene

Lj1g3v4885890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4885890.1 tr|B9GSA2|B9GSA2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_644752 PE=4 SV=1,92,3e-19,
,CUFF.33531.1
         (99 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC...    99   1e-21

>Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC
          | chr7:44331530-44321717 | 20130731
          Length = 401

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/50 (90%), Positives = 45/50 (90%)

Query: 1  MASGWGITGNKGRCYDFWIDFSEGMSTCREPKDRARLREDYLECLHHSKE 50
          MASGWGITGNKGRCYDFWIDFSE MSTCREPKD   LREDY ECLHHSKE
Sbjct: 1  MASGWGITGNKGRCYDFWIDFSECMSTCREPKDCVLLREDYFECLHHSKE 50