Miyakogusa Predicted Gene

Lj1g3v4863130.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4863130.1 Non Characterized Hit- tr|C6TBP9|C6TBP9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.37451
PE,84.88,0,seg,NULL; T_SNARE,Target SNARE coiled-coil domain;
SUBFAMILY NOT NAMED,NULL; SYNTAXIN,NULL; SYNTAXIN,CUFF.33490.1
         (324 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g109165.1 | syntaxin of plants protein | HC | chr7:4462452...   437   e-123
Medtr1g083790.1 | syntaxin of plants protein | HC | chr1:3729871...   414   e-116
Medtr7g084590.1 | syntaxin of plants protein | HC | chr7:3263932...    50   2e-06
Medtr8g066340.1 | syntaxin of plants protein | HC | chr8:2758912...    49   6e-06

>Medtr7g109165.1 | syntaxin of plants protein | HC |
           chr7:44624523-44629883 | 20130731
          Length = 404

 Score =  437 bits (1123), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/291 (76%), Positives = 237/291 (81%), Gaps = 2/291 (0%)

Query: 1   MATRNRTLQFRRHRDAVKSVRAPLXXXXXXXGG--PVIEMVSTXXXXXXXXXXYEPLSTH 58
           MATRNRT++FR++RD+VKS+R PL        G  PVIEMV+T          Y PLSTH
Sbjct: 1   MATRNRTVEFRKYRDSVKSLRTPLSSSASASSGGGPVIEMVNTSLLRTNNGSSYTPLSTH 60

Query: 59  DPGPGTSRDAFTVGLPPSWVDDSEVIATSIQQAKVKMAELTKAHAKALMPSFGDGKDDQH 118
           DPGP +S DAFTVGLPPSWVDDSE IAT+IQ AKVKM+ELTKAHAKALMPSFGDGKDDQ 
Sbjct: 61  DPGPSSSSDAFTVGLPPSWVDDSEEIATNIQSAKVKMSELTKAHAKALMPSFGDGKDDQR 120

Query: 119 LIETLTQEITALLRKSEVRLKRLSTAGGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSA 178
            IETLT+EITALLRKSEVRLKRLS   GSSEDSNVRKNVQRSLATDLQNLSMDLRRKQS 
Sbjct: 121 QIETLTREITALLRKSEVRLKRLSAGRGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQST 180

Query: 179 YLKRLQQQKEGYDGIDLEMNFNGSKSGMQDDGFSDVGFSEAQMTKLXXXXXXXXXXXXXX 238
           YLKRLQQQ+EGYDGIDLEMNF GS SG QDD F DVGFSE QMTKL              
Sbjct: 181 YLKRLQQQQEGYDGIDLEMNFKGSSSGFQDDEFDDVGFSEEQMTKLKKNEHISAEREREI 240

Query: 239 XQVVKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGLKQLRK 289
            QV KSV+ELAQIMKDLSVLVIDQGTIVDRIDYNIQSVAT+VEEGLKQL+K
Sbjct: 241 DQVAKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATTVEEGLKQLQK 291


>Medtr1g083790.1 | syntaxin of plants protein | HC |
           chr1:37298710-37303799 | 20130731
          Length = 376

 Score =  414 bits (1063), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/329 (65%), Positives = 257/329 (78%), Gaps = 9/329 (2%)

Query: 1   MATRNRTLQFRRHRDAVKSVRAPLXXXXXXX---GGPVIEMVSTXXXXXXXXXXYEPLST 57
           MATRNRTL FR++RDA+KSVRAP           GGPVIE+VST          Y PLST
Sbjct: 1   MATRNRTLIFRKYRDALKSVRAPSSSSPPSTSSRGGPVIELVSTSLLNPNRS--YAPLST 58

Query: 58  HDPGPGTSR--DAFTVGLPPSWVDDSEVIATSIQQAKVKMAELTKAHAKALMPSFGDGKD 115
            DPG G+S+  +  TVGLPP+WVD SE I+ ++Q+A+ KMAEL+KAHAKALMPSFGDGKD
Sbjct: 59  DDPG-GSSKGLNPITVGLPPAWVDVSEEISANVQRARTKMAELSKAHAKALMPSFGDGKD 117

Query: 116 DQHLIETLTQEITALLRKSEVRLKRLSTAGGSSEDSNVRKNVQRSLATDLQNLSMDLRRK 175
           DQH IE+LT E+T L+++SE RL+RL++AG  SEDSNVRKNVQRSLATDLQ+LS+DLR+K
Sbjct: 118 DQHAIESLTHEVTDLIKRSEKRLRRLASAG-PSEDSNVRKNVQRSLATDLQSLSVDLRKK 176

Query: 176 QSAYLKRLQQQKEGYDGIDLEMNFNGSKSGMQDDGFSDVGFSEAQMTKLXXXXXXXXXXX 235
           QS YLKRL+QQKEG+DG+DLE+N NGSKS  +DD   ++ F+E QM KL           
Sbjct: 177 QSTYLKRLRQQKEGHDGVDLEINMNGSKSKYEDDDLDNMIFNEHQMAKLKKSEAFTVERE 236

Query: 236 XXXXQVVKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGLKQLRKAERTQK 295
               QVV+SVNELAQIMKDLSVLVIDQGTIVDRIDYNIQ+VAT+VE+GLKQL+KAERTQK
Sbjct: 237 KEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQK 296

Query: 296 SGGMVTCATVLVIMCFVMLALLILKEIIF 324
            GGMV CA+VL+IMCFVML  ++ K   F
Sbjct: 297 KGGMVMCASVLLIMCFVMLQTVLEKTWSF 325


>Medtr7g084590.1 | syntaxin of plants protein | HC |
           chr7:32639320-32642331 | 20130731
          Length = 266

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 240 QVVKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGLKQLRKAERTQKSGGM 299
           ++ + + E  +I KDL+VLV DQG ++D I  NI + A +  +   QL KA ++ KS   
Sbjct: 185 EIEEQIGEANEIFKDLAVLVHDQGIVIDDIQSNIDTSAGATVQTKAQLAKANKSVKSKNK 244

Query: 300 VTCATVLVIMCFVMLALLIL 319
             C  VL+I   V++  LI+
Sbjct: 245 -WCWWVLLIFVAVLVIFLIV 263


>Medtr8g066340.1 | syntaxin of plants protein | HC |
           chr8:27589128-27583696 | 20130731
          Length = 274

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 245 VNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGLKQLRKAERTQKSGGMVTCAT 304
           VNE   I KDL+VLV +QGT++D I  NI++   +  +   QL KA +TQ+S   + C  
Sbjct: 201 VNE---IFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLAC-L 256

Query: 305 VLVIM 309
           +LVI 
Sbjct: 257 LLVIF 261