Miyakogusa Predicted Gene

Lj1g3v4862830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4862830.1 Non Characterized Hit- tr|I1NBC1|I1NBC1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26300 PE,83.75,0,DNA
repair protein MutS, domain I,DNA mismatch repair protein MutS,
N-terminal; DNA repair protein M,CUFF.33462.1
         (468 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g109470.1 | DNA mismatch repair MSH3-like protein | HC | c...   632   0.0  
Medtr6g086270.1 | DNA mismatch repair protein msh6 | HC | chr6:3...   166   4e-41

>Medtr7g109470.1 | DNA mismatch repair MSH3-like protein | HC |
           chr7:44767037-44759016 | 20130731
          Length = 1280

 Score =  632 bits (1629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/407 (77%), Positives = 345/407 (84%)

Query: 62  AKVKPSGKAEPRKRKQSAPEKVEPVKKSKSGTEVGKGAFKLSVLEPTHNLDIIKTSNDAD 121
           AK K S K EP+KRK     K+EP+KKSKSG EV + A KLS L P +NL++ KTS+ AD
Sbjct: 223 AKGKNSNKVEPKKRKLGGGAKMEPMKKSKSGNEVNRVAVKLSPLAPLNNLEVRKTSDGAD 282

Query: 122 NVATGDASERFALREAQKFRFLREDRKDAKRRRPEDENYDSRTLYLPPDFLRSLSDGQKQ 181
           NVATGD+SERFALREAQKF FL +DR+DAKRRRP DENYDSRTLYLPPDF+R+LS GQKQ
Sbjct: 283 NVATGDSSERFALREAQKFHFLGKDRRDAKRRRPGDENYDSRTLYLPPDFVRNLSGGQKQ 342

Query: 182 WWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPEKNFSMNVEK 241
           WWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKEL+LQYM+GEQPHCGFPEKNF++NVE+
Sbjct: 343 WWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELELQYMRGEQPHCGFPEKNFTVNVER 402

Query: 242 LARKGYRVLVVEQTETPEQLELRRKQKGSKDKVVRREICAVVTKGTLMDGELLSANPEAA 301
           LARKGYRVLVVEQTETPEQ+ELRRK+ GSKDKVVRREICAVV+KGTL+DGE +S NPEAA
Sbjct: 403 LARKGYRVLVVEQTETPEQMELRRKESGSKDKVVRREICAVVSKGTLIDGEFMSTNPEAA 462

Query: 302 YLMALTXXXXXXXXXXSERTYGVCIVDVTTSRVILGQFKDDSECSALCCILSEIRPVEIV 361
           YLMALT          SERTYGVC+VDV TSRVILGQF DDSECSALC ILSEIRPVEIV
Sbjct: 463 YLMALTEYCENNPNEMSERTYGVCVVDVATSRVILGQFNDDSECSALCSILSEIRPVEIV 522

Query: 362 KPAKLLSAETERVLVKHTRNPLVNELIPIVEFWDADKTLDQLKRIYRHTNDASVEDSGVD 421
           KPAKLLSAETER L+KHTRNPLVNELIP VEFWDADKTLD LKRIY H ND S +D G+D
Sbjct: 523 KPAKLLSAETERALLKHTRNPLVNELIPNVEFWDADKTLDHLKRIYGHNNDVSAQDGGLD 582

Query: 422 CLPGVLLELVKTGDDSRXXXXXXXXXXXXXKQAFLDERLLRFAQFEL 468
           CLP VL+ELVKT  DSR             KQAFLDE+LLRFAQFEL
Sbjct: 583 CLPDVLVELVKTDHDSRSALSALGGALYYLKQAFLDEQLLRFAQFEL 629


>Medtr6g086270.1 | DNA mismatch repair protein msh6 | HC |
           chr6:32387897-32378956 | 20130731
          Length = 1155

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/252 (38%), Positives = 138/252 (54%), Gaps = 14/252 (5%)

Query: 134 LREAQKFRFLREDR-KDAKRRRPEDENYDSRTLYLPPDFLRSLSDGQKQWWEFKSKHMDK 192
           L  A KF +L   R +DA  RRP+D  YD  TLY+PP+ LR ++  QKQ+W  K K+MD 
Sbjct: 279 LEIASKFEWLDPSRIRDANGRRPDDPLYDRTTLYIPPEVLRKMTASQKQYWSVKCKYMDV 338

Query: 193 VLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHC---GFPEKNFSMNVEKLARKGYRV 249
           +LFFK+GKFYEL+EMDA +G KELD +        C   G  E      V+ L  +GY+V
Sbjct: 339 LLFFKVGKFYELYEMDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVKNLVARGYKV 398

Query: 250 LVVEQTETPEQLELRRKQKGSKDKVVRREICAVVTKGTLMDGELLSANPEAAYLMALTXX 309
             VEQ ET E+ + R       + V++R++  VVT  T +DG +    P+A +L+A+   
Sbjct: 399 GRVEQLETSEEAKAR-----GANSVIQRKLVQVVTPSTNVDGNI---GPDANHLLAI--K 448

Query: 310 XXXXXXXXSERTYGVCIVDVTTSRVILGQFKDDSECSALCCILSEIRPVEIVKPAKLLSA 369
                      TYG   VD    R+ +G   DD+ CSAL  +L ++ P EI+   + +S 
Sbjct: 449 EESNGSDNGSVTYGFAFVDCARLRLWVGSIDDDASCSALGALLMQVSPKEIIYERRGVSK 508

Query: 370 ETERVLVKHTRN 381
           E E+   K + N
Sbjct: 509 EAEKAFRKFSLN 520