Miyakogusa Predicted Gene

Lj1g3v4862710.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4862710.1 Non Characterized Hit- tr|J9K7Q5|J9K7Q5_ACYPI
Uncharacterized protein OS=Acyrthosiphon pisum PE=4
SV,31.06,3e-19,SUBFAMILY NOT NAMED,NULL;
UNCHARACTERIZED,NULL,CUFF.33455.1
         (185 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g087100.1 | transport complex protein | HC | chr1:38991336...   282   1e-76
Medtr1g087100.2 | transport complex protein | HC | chr1:38992676...   281   3e-76

>Medtr1g087100.1 | transport complex protein | HC |
           chr1:38991336-38999735 | 20130731
          Length = 773

 Score =  282 bits (721), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/186 (80%), Positives = 163/186 (87%), Gaps = 3/186 (1%)

Query: 1   MLVDLFLQELEVIGNEVKEILPQGIRKHHRVDSTGSNASSTRSNSFREEKLTRSNTLKGR 60
           M VD FLQELEVI NEVK+ILPQGIRKH R DS   ++ S+RSN  REEKL RSNT + R
Sbjct: 590 MFVDFFLQELEVIHNEVKQILPQGIRKHRRTDSN-GSSVSSRSNPLREEKLGRSNTQRAR 648

Query: 61  SQQLLETHLAKLFKQKVEIFTKVEYTQESVIMTIVKLCLKSLQEFVRFQTFNRSGFQQIQ 120
           SQ LLETHLAKLFKQKVEIFTK+EYTQESV+ TIVK CLKS+QEFVR QTFNRSGFQQIQ
Sbjct: 649 SQ-LLETHLAKLFKQKVEIFTKIEYTQESVVTTIVKFCLKSVQEFVRLQTFNRSGFQQIQ 707

Query: 121 LDIQFLRTPIKEIVEDEAAMDFLLDEVIVAATERCLDPISLEPPILERLIGAKLAKTKEQ 180
           LDIQFLRTPI+EIVEDEAA+DFLLDEVIVA  ERCLDPI LEPPIL++L+ AKLAKTKEQ
Sbjct: 708 LDIQFLRTPIREIVEDEAAVDFLLDEVIVATAERCLDPIPLEPPILDKLVQAKLAKTKEQ 767

Query: 181 D-TISS 185
           + TISS
Sbjct: 768 NTTISS 773


>Medtr1g087100.2 | transport complex protein | HC |
           chr1:38992676-38999735 | 20130731
          Length = 583

 Score =  281 bits (719), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 149/186 (80%), Positives = 163/186 (87%), Gaps = 3/186 (1%)

Query: 1   MLVDLFLQELEVIGNEVKEILPQGIRKHHRVDSTGSNASSTRSNSFREEKLTRSNTLKGR 60
           M VD FLQELEVI NEVK+ILPQGIRKH R DS   ++ S+RSN  REEKL RSNT + R
Sbjct: 400 MFVDFFLQELEVIHNEVKQILPQGIRKHRRTDSN-GSSVSSRSNPLREEKLGRSNTQRAR 458

Query: 61  SQQLLETHLAKLFKQKVEIFTKVEYTQESVIMTIVKLCLKSLQEFVRFQTFNRSGFQQIQ 120
           SQ LLETHLAKLFKQKVEIFTK+EYTQESV+ TIVK CLKS+QEFVR QTFNRSGFQQIQ
Sbjct: 459 SQ-LLETHLAKLFKQKVEIFTKIEYTQESVVTTIVKFCLKSVQEFVRLQTFNRSGFQQIQ 517

Query: 121 LDIQFLRTPIKEIVEDEAAMDFLLDEVIVAATERCLDPISLEPPILERLIGAKLAKTKEQ 180
           LDIQFLRTPI+EIVEDEAA+DFLLDEVIVA  ERCLDPI LEPPIL++L+ AKLAKTKEQ
Sbjct: 518 LDIQFLRTPIREIVEDEAAVDFLLDEVIVATAERCLDPIPLEPPILDKLVQAKLAKTKEQ 577

Query: 181 D-TISS 185
           + TISS
Sbjct: 578 NTTISS 583