Miyakogusa Predicted Gene
- Lj1g3v4838380.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4838380.1 Non Characterized Hit- tr|A5K2K1|A5K2K1_PLAVS
RNA-binding protein, putative OS=Plasmodium vivax
(str,37.66,5e-18,WW_DOMAIN_2,WW/Rsp5/WWP; RRM,RNA recognition motif
domain; RNA recognition motif,RNA recognition mot,CUFF.33435.1
(378 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g109810.1 | flowering time control FCA-like protein | HC |... 521 e-148
Medtr7g109810.2 | flowering time control FCA-like protein | HC |... 391 e-109
Medtr7g109810.3 | flowering time control FCA-like protein | HC |... 227 1e-59
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 163 3e-40
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 85 1e-16
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 84 2e-16
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 81 2e-15
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 58 2e-08
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 52 1e-06
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 52 1e-06
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 52 1e-06
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 52 1e-06
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 51 2e-06
>Medtr7g109810.1 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 498
Score = 521 bits (1343), Expect = e-148, Method: Compositional matrix adjust.
Identities = 260/376 (69%), Positives = 292/376 (77%), Gaps = 5/376 (1%)
Query: 1 MRQGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADR-RERLGVRGPCRNLEKK 59
+RQGSC VKYSTF EAD AIKAL+NQYTF GES PVVVRFADR RER G+R C+N+E++
Sbjct: 113 VRQGSCLVKYSTFDEADMAIKALSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERR 172
Query: 60 DPSEEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIATNRGYAFVKFSNREMALA 119
DP E +V KV+V IN EAS +EIEEIFSPYGH+EDV + NRGY FVKF NREMALA
Sbjct: 173 DPPE---VVGKVYVGCINNEASKQEIEEIFSPYGHIEDVVVLRNRGYGFVKFYNREMALA 229
Query: 120 AIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGPCSQESVAWPLPNFG 179
AIKGL+RT+TMRGCD P IVRFAEPKKP+ GE RGNY+ NA++GP SQE AWPLPNF
Sbjct: 230 AIKGLDRTFTMRGCDQPLIVRFAEPKKPRMGELRGNYLPANASYGPSSQEPAAWPLPNFC 289
Query: 180 DPNTGGNIMPIAPHHSTVLHPQVASNMPNWQPGPTVAQQPFLPQQAHSQLASMPLQSIQA 239
DPNTGG+ M IAPHHS + H QV +++PNWQP TV QQ F PQ HSQL SMPL+ +QA
Sbjct: 290 DPNTGGSNMHIAPHHSRLPHQQVNAHIPNWQPVATVVQQQFPPQHVHSQLTSMPLRPLQA 349
Query: 240 PNFPSQPFITEVQRQSHSTDSSIQNIEQQLSSQLPNQIGSNPNTVAGSISPDLPTSPQDE 299
PN SQPFITEVQRQ H DS +QNIEQQLSSQLP Q NTV GS SPDL T+PQDE
Sbjct: 350 PNLSSQPFITEVQRQFHPPDSLVQNIEQQLSSQLPTQT-ERCNTVVGSTSPDLHTNPQDE 408
Query: 300 EFPECDWSEHYCPDGDKYYYNSVTCESKWEKPEEYALYXXXXXXXXXXXXXXCLFAKLSL 359
EFPE DWSEHYCPDG+KYYYN VTCES+WEKP EYALY L +LSL
Sbjct: 409 EFPESDWSEHYCPDGNKYYYNCVTCESRWEKPGEYALYDKESQKQHEQDDHSLLQPQLSL 468
Query: 360 SSSQEVAYRQQETNHD 375
SSSQEV+ +QQETNHD
Sbjct: 469 SSSQEVSQKQQETNHD 484
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 70 KVFVNNINREASSKEIEEIFSPYGHVEDVFIATNR------GYAFVKFSNREMALAAIKG 123
KV+V + R AS ++ +F YG + +V + ++ G VK+S + A AIK
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 124 LNRTYTMRGCDLPFIVRFAEPKKPKTG 150
L+ YT G P +VRFA+ K+ + G
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFG 161
>Medtr7g109810.2 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 385
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/274 (70%), Positives = 220/274 (80%), Gaps = 4/274 (1%)
Query: 1 MRQGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADR-RERLGVRGPCRNLEKK 59
+RQGSC VKYSTF EAD AIKAL+NQYTF GES PVVVRFADR RER G+R C+N+E++
Sbjct: 113 VRQGSCLVKYSTFDEADMAIKALSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERR 172
Query: 60 DPSEEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIATNRGYAFVKFSNREMALA 119
DP E +V KV+V IN EAS +EIEEIFSPYGH+EDV + NRGY FVKF NREMALA
Sbjct: 173 DPPE---VVGKVYVGCINNEASKQEIEEIFSPYGHIEDVVVLRNRGYGFVKFYNREMALA 229
Query: 120 AIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGPCSQESVAWPLPNFG 179
AIKGL+RT+TMRGCD P IVRFAEPKKP+ GE RGNY+ NA++GP SQE AWPLPNF
Sbjct: 230 AIKGLDRTFTMRGCDQPLIVRFAEPKKPRMGELRGNYLPANASYGPSSQEPAAWPLPNFC 289
Query: 180 DPNTGGNIMPIAPHHSTVLHPQVASNMPNWQPGPTVAQQPFLPQQAHSQLASMPLQSIQA 239
DPNTGG+ M IAPHHS + H QV +++PNWQP TV QQ F PQ HSQL SMPL+ +QA
Sbjct: 290 DPNTGGSNMHIAPHHSRLPHQQVNAHIPNWQPVATVVQQQFPPQHVHSQLTSMPLRPLQA 349
Query: 240 PNFPSQPFITEVQRQSHSTDSSIQNIEQQLSSQL 273
PN SQPFITEVQRQ H DS +QNIEQQLSSQ+
Sbjct: 350 PNLSSQPFITEVQRQFHPPDSLVQNIEQQLSSQV 383
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 70 KVFVNNINREASSKEIEEIFSPYGHVEDVFIATNR------GYAFVKFSNREMALAAIKG 123
KV+V + R AS ++ +F YG + +V + ++ G VK+S + A AIK
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 124 LNRTYTMRGCDLPFIVRFAEPKKPKTG 150
L+ YT G P +VRFA+ K+ + G
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFG 161
>Medtr7g109810.3 | flowering time control FCA-like protein | HC |
chr7:44985779-44980846 | 20130731
Length = 288
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/159 (70%), Positives = 130/159 (81%), Gaps = 4/159 (2%)
Query: 1 MRQGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADR-RERLGVRGPCRNLEKK 59
+RQGSC VKYSTF EAD AIKAL+NQYTF GES PVVVRFADR RER G+R C+N+E++
Sbjct: 113 VRQGSCLVKYSTFDEADMAIKALSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERR 172
Query: 60 DPSEEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIATNRGYAFVKFSNREMALA 119
DP E +V KV+V IN EAS +EIEEIFSPYGH+EDV + NRGY FVKF NREMALA
Sbjct: 173 DPPE---VVGKVYVGCINNEASKQEIEEIFSPYGHIEDVVVLRNRGYGFVKFYNREMALA 229
Query: 120 AIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVS 158
AIKGL+RT+TMRGCD P IVRFAEPKKP+ GE R +++
Sbjct: 230 AIKGLDRTFTMRGCDQPLIVRFAEPKKPRMGELRFCFLT 268
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 70 KVFVNNINREASSKEIEEIFSPYGHVEDVFIATNR------GYAFVKFSNREMALAAIKG 123
KV+V + R AS ++ +F YG + +V + ++ G VK+S + A AIK
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 124 LNRTYTMRGCDLPFIVRFAEPKKPKTG 150
L+ YT G P +VRFA+ K+ + G
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFG 161
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 113/169 (66%), Gaps = 24/169 (14%)
Query: 3 QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFAD-RRERLGVRGPCRNLEKKDP 61
QG CF+KY+T EAD+AI+AL+N++T G P+ VR+AD RERLG
Sbjct: 129 QGCCFIKYATSEEADQAIRALHNRHTLPGGVGPIQVRYADGERERLGA------------ 176
Query: 62 SEEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIATN-----RGYAFVKFSNREM 116
+ K+FV ++N++AS KE+EE+FS YG +EDV++ + RG FVK+S+R+M
Sbjct: 177 -----VEYKLFVGSLNKQASVKEVEEVFSKYGRIEDVYLMRDDQKQSRGCGFVKYSHRDM 231
Query: 117 ALAAIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGP 165
ALAAI LN YTMRGC+ P IVRFA+PK+P+ G+SRG G+A FGP
Sbjct: 232 ALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGPAF-GSAGFGP 279
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 28/37 (75%)
Query: 297 QDEEFPECDWSEHYCPDGDKYYYNSVTCESKWEKPEE 333
Q+ C+W+EH P+G KYYYNSVT ES+WEKPEE
Sbjct: 591 QNTTLGNCNWTEHLSPEGFKYYYNSVTGESRWEKPEE 627
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 70 KVFVNNINREASSKEIEEIFSPYGHVEDVFIATNR------GYAFVKFSNREMALAAIKG 123
K+FV ++ R A+ ++I +F +G+V +V + +R G F+K++ E A AI+
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 124 LNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNAN 162
L+ +T+ G P VR+A+ ++ + G G+ N
Sbjct: 149 LHNRHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLN 187
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 24/171 (14%)
Query: 3 QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLGVRGPCRNLEKKDPS 62
+G CFV + EAD+A+ A +N+ T G S P+ V++AD G LE
Sbjct: 57 RGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYAD--------GELERLE----- 103
Query: 63 EEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIA-----TNRGYAFVKFSNREMA 117
K+F+ + + S E+ +FS YG ++D+ I T++G AF+K+ +E A
Sbjct: 104 ------HKLFIGMLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 157
Query: 118 LAAIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGPCSQ 168
LAA++ +N + M G +P +V++A+ +K + S +N G SQ
Sbjct: 158 LAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHDSQ 208
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 24/171 (14%)
Query: 3 QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLGVRGPCRNLEKKDPS 62
+G CFV + EAD+A+ A +N+ T G S P+ V++AD LE+
Sbjct: 57 RGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGE-----------LER---- 101
Query: 63 EEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIA-----TNRGYAFVKFSNREMA 117
L K+F+ + + S E+ +FS YG ++D+ I T++G AF+K+ +E A
Sbjct: 102 ----LEHKLFIGMLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 157
Query: 118 LAAIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGPCSQ 168
LAA++ +N + M G +P +V++A+ +K + S +N G SQ
Sbjct: 158 LAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHDSQ 208
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 25/172 (14%)
Query: 3 QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLGVRGPCRNLEKKDPS 62
+G CFV + EAD+A+ A +N+ T G S P+ V++AD G LE
Sbjct: 57 RGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYAD--------GELERLE----- 103
Query: 63 EEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFI------ATNRGYAFVKFSNREM 116
K+F+ + + S E+ +FS YG ++D+ I + G AF+K+ +E
Sbjct: 104 ------HKLFIGMLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQ 157
Query: 117 ALAAIKGLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGPCSQ 168
ALAA++ +N + M G +P +V++A+ +K + S +N G SQ
Sbjct: 158 ALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHDSQ 209
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 25/207 (12%)
Query: 3 QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLGVRGPCRNLEKKDPS 62
+G FV++ SE +A+ +N Y S P+ + A R+ G + ++ S
Sbjct: 232 KGYGFVRFGDESERSQAMTQMNGVYC---SSRPMRIGAATPRKSSGHQPGGQSNGTSSQS 288
Query: 63 EEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIATNRGYAFVKFSNREMALAAIK 122
E +FV ++ + +++++ FS YG + V I +G FV+F+NR A A++
Sbjct: 289 EADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGKGCGFVQFANRNNAEEALQ 348
Query: 123 GLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVSGNANFGPCSQESVAWPLPNFGDP- 181
LN T + VR + + P + R + S W P F P
Sbjct: 349 KLNGTMIGKQT-----VRLSWGRNPAYKQFRLDVGS--------------WAGPYFPSPI 389
Query: 182 -NTGGNIMPIAPHHSTVLHPQVASNMP 207
+ G MP +PHH ++P P
Sbjct: 390 YDGYGYAMP-SPHHDPSMYPLAYGGYP 415
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 36/150 (24%)
Query: 3 QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLGVRGPCRNLEKKDPS 62
+G F+++ +A RA+ L N G+ C V PS
Sbjct: 256 KGFAFLRFENVEQAKRAVAELKNP-VINGKQCGVT-----------------------PS 291
Query: 63 EEAVLVDKVFVNNINREASSKEIEEIFSPYG--HVEDVFI-------ATNRGYAFVKFSN 113
+++ D +++ NI + + + ++E YG +VED+ + TNRG+AF++FS+
Sbjct: 292 QDS---DTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 348
Query: 114 REMALAAIKGLNRTYTMRGCDLPFIVRFAE 143
R A+ A K L + G D P V FA+
Sbjct: 349 RSDAMDAFKRLQKRDVTFGVDKPAKVSFAD 378
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 36/150 (24%)
Query: 3 QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLGVRGPCRNLEKKDPS 62
+G F+++ +A RA+ L N G+ C V PS
Sbjct: 256 KGFAFLRFENVEQAKRAVAELKNP-VINGKQCGVT-----------------------PS 291
Query: 63 EEAVLVDKVFVNNINREASSKEIEEIFSPYG--HVEDVFI-------ATNRGYAFVKFSN 113
+++ D +++ NI + + + ++E YG +VED+ + TNRG+AF++FS+
Sbjct: 292 QDS---DTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 348
Query: 114 REMALAAIKGLNRTYTMRGCDLPFIVRFAE 143
R A+ A K L + G D P V FA+
Sbjct: 349 RSDAMDAFKRLQKRDVTFGVDKPAKVSFAD 378
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 36/150 (24%)
Query: 3 QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLGVRGPCRNLEKKDPS 62
+G F+++ +A RA+ L N G+ C V PS
Sbjct: 255 KGFAFLRFENVEQAKRAVAELKNP-VINGKQCGVT-----------------------PS 290
Query: 63 EEAVLVDKVFVNNINREASSKEIEEIFSPYG--HVEDVFI-------ATNRGYAFVKFSN 113
+++ D +++ NI + + + ++E YG +VED+ + TNRG+AF++FS+
Sbjct: 291 QDS---DTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 347
Query: 114 REMALAAIKGLNRTYTMRGCDLPFIVRFAE 143
R A+ A K L + G D P V FA+
Sbjct: 348 RSDAMDAFKRLQKRDVTFGVDKPAKVSFAD 377
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 36/150 (24%)
Query: 3 QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLGVRGPCRNLEKKDPS 62
+G F+++ +A RA+ L N G+ C V PS
Sbjct: 255 KGFAFLRFENVEQAKRAVAELKNP-VINGKQCGVT-----------------------PS 290
Query: 63 EEAVLVDKVFVNNINREASSKEIEEIFSPYG--HVEDVFI-------ATNRGYAFVKFSN 113
+++ D +++ NI + + + ++E YG +VED+ + TNRG+AF++FS+
Sbjct: 291 QDS---DTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSS 347
Query: 114 REMALAAIKGLNRTYTMRGCDLPFIVRFAE 143
R A+ A K L + G D P V FA+
Sbjct: 348 RSDAMDAFKRLQKRDVTFGVDKPAKVSFAD 377
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 3 QGSCFVKYSTFSEADRAIKALNNQYTFLGESCPVVVRFADRRERLGVRGPCRNLEKKDPS 62
+G FV++ E +A+ +N + S + + A R+ G + ++ S
Sbjct: 229 KGYGFVRFGDDGERSKALNEMNGVFC---SSRAMRIGAATPRKSSGYQQGGQSNGTPSQS 285
Query: 63 EEAVLVDKVFVNNINREASSKEIEEIFSPYGHVEDVFIATNRGYAFVKFSNREMALAAIK 122
+ +FV ++ A+++++ + FS YG + V I +G FV+F+NR A A++
Sbjct: 286 DTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQ 345
Query: 123 GLNRTYTMRGCDLPFIVRFAEPKKPKTGESRGNYVS---GNANFGPCSQESVAWPLPN 177
LN T + VR + + P + R + S G A +G + + + +P+
Sbjct: 346 KLNGTTVGKQT-----VRLSWGRNPANKQFRSEFGSPWNGPAYYGGPAYDGYGYAMPH 398