Miyakogusa Predicted Gene

Lj1g3v4836270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4836270.1 tr|Q0IPQ2|Q0IPQ2_ORYSJ Os12g0176200 protein
OS=Oryza sativa subsp. japonica GN=Os12g0176200 PE=4
SV=,41.45,3e-19,Q9SYJ1_ARATH_Q9SYJ1;,NIF system FeS cluster assembly,
NifU, C-terminal; NifU,NIF system FeS cluster
,NODE_35424_length_654_cov_231.689606.path2.1
         (212 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g109850.1 | nitrogen fixation protein NifU | HC | chr7:450...   265   2e-71
Medtr8g038785.1 | peptidyl-prolyl cis-trans isomerase, FKBP-type...   119   2e-27
Medtr2g005900.1 | nitrogen fixation protein NifU | HC | chr2:389...    92   5e-19
Medtr2g036690.1 | nitrogen fixation protein NifU | HC | chr2:158...    75   5e-14
Medtr2g036690.2 | nitrogen fixation protein NifU | HC | chr2:158...    65   4e-11

>Medtr7g109850.1 | nitrogen fixation protein NifU | HC |
           chr7:45003868-45005708 | 20130731
          Length = 216

 Score =  265 bits (678), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 137/216 (63%), Positives = 159/216 (73%), Gaps = 6/216 (2%)

Query: 1   MASLTSISSM---MKFTVHQNLHHLNSTVTNF--TKRTSSTIRFAXXXXXXXXXXXXXXG 55
           MA+LT I S+   +   + Q  H+LN  + NF   K+ S T                  G
Sbjct: 1   MATLTPICSIPTKLNLNIQQKQHNLNFPLFNFKIAKQNSRTSTTVIRSSSTANQNQSSPG 60

Query: 56  LYSAAKIDLTAPNVDLVLEDVRPYLISDXXXXXXXXXXXXXISLKLQGACESCPSSTTTM 115
           LYSA K +LTA NVDLVLEDVRPYLISD             +SLKLQGACESCPSSTTTM
Sbjct: 61  LYSAQKFELTASNVDLVLEDVRPYLISDGGNVDVVSVENGVVSLKLQGACESCPSSTTTM 120

Query: 116 KLGIERVLKEKFGDAVKDIVQVYDE-EPKETTVEAVNNHLEILRPAIKNFGGSVQVLSVE 174
           K+GIERVLKEKFGD+++DIVQV+D+ + +ETTVEAVNNHLEILRPAIKN+GGSVQVLSVE
Sbjct: 121 KMGIERVLKEKFGDSIEDIVQVFDDDQARETTVEAVNNHLEILRPAIKNYGGSVQVLSVE 180

Query: 175 GSDCHVDYVGPDSIGSGIKAAIKEKFPDILNVTFTT 210
           G DC V+YVGP+SIGSG+KAAIKEKFPDILNVTF+T
Sbjct: 181 GGDCVVEYVGPESIGSGVKAAIKEKFPDILNVTFST 216


>Medtr8g038785.1 | peptidyl-prolyl cis-trans isomerase, FKBP-type
           protein | LC | chr8:14392416-14387801 | 20130731
          Length = 594

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/135 (50%), Positives = 80/135 (59%), Gaps = 11/135 (8%)

Query: 1   MASLTSISSM---MKFTVHQNLHHLNSTVTNF-----TKRTSSTIRFAXXXXXXXXXXXX 52
           MA+LT I S+   +  ++ Q  H+ N  + N        RTS+TI               
Sbjct: 1   MATLTPICSIPAELNLSIQQKQHNFNFALFNLKNPKQNSRTSTTI---IHLSFTANQNQS 57

Query: 53  XXGLYSAAKIDLTAPNVDLVLEDVRPYLISDXXXXXXXXXXXXXISLKLQGACESCPSST 112
             GLYSA K DLTAPNVDLVLEDVRPYLISD             +SLKLQG CESCPSST
Sbjct: 58  SMGLYSAKKFDLTAPNVDLVLEDVRPYLISDGGNVDVVSVENGVVSLKLQGVCESCPSST 117

Query: 113 TTMKLGIERVLKEKF 127
           TTMK+G++RVLKEKF
Sbjct: 118 TTMKMGMKRVLKEKF 132


>Medtr2g005900.1 | nitrogen fixation protein NifU | HC |
           chr2:389162-393329 | 20130731
          Length = 223

 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 85/156 (54%), Gaps = 7/156 (4%)

Query: 59  AAKIDLTAPNVDLVLEDVRPYLISDXXXXXXXXXXXXXISLKLQGACESCPSSTTTMKLG 118
           A ++ LTA NV+ VL+++RPYLISD             + LKLQGAC SCPSS  TMK+G
Sbjct: 68  AVELPLTAENVETVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMG 127

Query: 119 IERVLKEKFGDAVKDIVQVYDEEPK-ETTVEAVNNHLEILRP-AIKNFGGSVQVLSVEGS 176
           IER L EK  + V  +  V DEE   E   E +   LE LRP  +   GG+++++++E  
Sbjct: 128 IERRLMEKIPEIVA-VEPVTDEETGLELNDENIEKVLEELRPYLVGAAGGTLELVAIEEP 186

Query: 177 DCHVDYVGPDSIGSGIKAAI----KEKFPDILNVTF 208
              V   GP +    ++ A+    +EK P I  V  
Sbjct: 187 IVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQL 222


>Medtr2g036690.1 | nitrogen fixation protein NifU | HC |
           chr2:15890490-15888331 | 20130731
          Length = 242

 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 3/143 (2%)

Query: 62  IDLTAPNVDLVLEDVRPYLISDXXXXXXXXXXXXXISLKLQGACESCPSSTTTMKLGIER 121
           + LT  NV+ VL++VRP L++D             + LKLQGAC SCPSST T+K+GIE 
Sbjct: 89  LPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIET 148

Query: 122 VLKEKFGDAVKDIVQVYDEEPK-ETTVEAVNNHLEILRP-AIKNFGGSVQVLSVEGSDCH 179
            L++K  + + ++ Q+ D E   E T + V + L  +RP  I   GG+++++ +      
Sbjct: 149 RLRDKIPE-ILEVEQILDTETGLELTEDNVESVLSEIRPYLIGTGGGTLELVEINDYIVK 207

Query: 180 VDYVGPDSIGSGIKAAIKEKFPD 202
           V   GP +    ++ A+ +K  D
Sbjct: 208 VRLSGPAAGVMTVRVALTQKLRD 230


>Medtr2g036690.2 | nitrogen fixation protein NifU | HC |
           chr2:15890404-15888859 | 20130731
          Length = 202

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 5/95 (5%)

Query: 62  IDLTAPNVDLVLEDVRPYLISDXXXXXXXXXXXXXISLKLQGACESCPSSTTTMKLGIER 121
           + LT  NV+ VL++VRP L++D             + LKLQGAC SCPSST T+K+GIE 
Sbjct: 89  LPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIET 148

Query: 122 VLKEKFGDAVKDIVQVYDEEP----KETTVEAVNN 152
            L++K  + + ++ Q+ D E      E  VE+V N
Sbjct: 149 RLRDKIPE-ILEVEQILDTETGLELTEDNVESVCN 182