Miyakogusa Predicted Gene

Lj1g3v4830340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4830340.1 Non Characterized Hit- tr|I1JQW4|I1JQW4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.1891 PE=,87.43,0,Release
factor,NULL; no description,Peptide chain release factor; prfA:
peptide chain release factor,CUFF.33382.1
         (415 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g110570.1 | peptide chain release factor 1 | HC | chr7:453...   645   0.0  
Medtr7g110570.2 | peptide chain release factor 1 | HC | chr7:453...   627   e-180
Medtr7g108300.1 | peptide chain release factor 1 | HC | chr7:440...   229   3e-60
Medtr7g112100.1 | peptide chain release factor 2 | HC | chr7:460...   153   3e-37
Medtr7g080430.1 | peptide chain release factor 2 | HC | chr7:305...   124   2e-28
Medtr1g041890.1 | peptide chain release factor, putative | HC | ...    67   4e-11
Medtr6g059330.1 | class I peptide chain release factor | HC | ch...    56   6e-08

>Medtr7g110570.1 | peptide chain release factor 1 | HC |
           chr7:45311012-45315116 | 20130731
          Length = 438

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/414 (77%), Positives = 360/414 (86%), Gaps = 6/414 (1%)

Query: 1   MRNHGRFIMCRYLSRWRKQFESNSDXXXXXXXXXXXXXXXSYSAEVQPQLSPDLLNIMEQ 60
           MR +GRF+  RYL + RK+FES S+                YS+EV+P++SPDLL IMEQ
Sbjct: 1   MRINGRFMNFRYLFQLRKRFESKSELSLPNFRFRL------YSSEVEPEISPDLLKIMEQ 54

Query: 61  RLSAIEHRSACLSNLLNQPEATPSEYARANKELRKLSGSVELINELRAKQKEIDGLKTLM 120
           R SAI+HR+ CL NL+NQPE + SEYARANKELRKLSGSV+LIN+L+AKQKEIDGLK+LM
Sbjct: 55  RFSAIKHRATCLDNLINQPETSQSEYARANKELRKLSGSVQLINQLKAKQKEIDGLKSLM 114

Query: 121 AESSEDKDMLSMATEEFGQAKEEERRLQNMLLKSLLPKDDADERDSILEVRAGSGGEEAS 180
            ESSEDKDML+MATEE GQA EEER+LQN+LLKSLLPKDDADERD ILEVRAG+GGEEAS
Sbjct: 115 NESSEDKDMLNMATEEMGQAIEEERKLQNLLLKSLLPKDDADERDCILEVRAGTGGEEAS 174

Query: 181 LFAMDIFKMYEKYAHKNGWKFEVVDIAQSDMKGYKEASAAIAGAGVFGKLKFESGIHRVQ 240
           LFAM+IFKMYEKYAH  GWKF+VVDIAQSDMKG+KEA+AAI G GVFGKLKFESGIHRVQ
Sbjct: 175 LFAMNIFKMYEKYAHNKGWKFDVVDIAQSDMKGFKEATAAILGVGVFGKLKFESGIHRVQ 234

Query: 241 RVPVTEKLGRVHTSAVSVAILPQADEVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRI 300
           RVPVTEKLGRVHTSAVSVAILPQADEVDVQLK EDLK+D YRSGGSGGQHAN T+SAVR+
Sbjct: 235 RVPVTEKLGRVHTSAVSVAILPQADEVDVQLKKEDLKIDFYRSGGSGGQHANKTSSAVRM 294

Query: 301 THIPTGIIVAIQDERSQHMNXXXXXXXXXXXXYEMERLRLHSNRSKLRSEQIGSGDRSER 360
           THIPTGI++AIQDERSQHMN            YE+ER RLHS+RSKLRS+QIGSGDRSER
Sbjct: 295 THIPTGIVIAIQDERSQHMNKAKALKVLCAKLYEIERTRLHSSRSKLRSDQIGSGDRSER 354

Query: 361 IRTYNFPQGRVTDHRVGITYHSIDDVMQGENLDVFIDALLLREEMDAVASFTSS 414
           IRTYNFPQGRVTDHRVGITYH+IDDVMQGE+LD FIDALLL+EEMDA+A+F SS
Sbjct: 355 IRTYNFPQGRVTDHRVGITYHNIDDVMQGESLDAFIDALLLKEEMDAIATFRSS 408


>Medtr7g110570.2 | peptide chain release factor 1 | HC |
           chr7:45310948-45315157 | 20130731
          Length = 403

 Score =  627 bits (1616), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 316/414 (76%), Positives = 354/414 (85%), Gaps = 12/414 (2%)

Query: 1   MRNHGRFIMCRYLSRWRKQFESNSDXXXXXXXXXXXXXXXSYSAEVQPQLSPDLLNIMEQ 60
           MR +GRF+  RYL + RK+FES S+                YS+EV+P++SPDLL IMEQ
Sbjct: 1   MRINGRFMNFRYLFQLRKRFESKSELSLPNFRFRL------YSSEVEPEISPDLLKIMEQ 54

Query: 61  RLSAIEHRSACLSNLLNQPEATPSEYARANKELRKLSGSVELINELRAKQKEIDGLKTLM 120
           R SAI+HR+ CL NL+NQPE + SEYARANKELRKLSGSV+LIN+L+AKQK      +LM
Sbjct: 55  RFSAIKHRATCLDNLINQPETSQSEYARANKELRKLSGSVQLINQLKAKQK------SLM 108

Query: 121 AESSEDKDMLSMATEEFGQAKEEERRLQNMLLKSLLPKDDADERDSILEVRAGSGGEEAS 180
            ESSEDKDML+MATEE GQA EEER+LQN+LLKSLLPKDDADERD ILEVRAG+GGEEAS
Sbjct: 109 NESSEDKDMLNMATEEMGQAIEEERKLQNLLLKSLLPKDDADERDCILEVRAGTGGEEAS 168

Query: 181 LFAMDIFKMYEKYAHKNGWKFEVVDIAQSDMKGYKEASAAIAGAGVFGKLKFESGIHRVQ 240
           LFAM+IFKMYEKYAH  GWKF+VVDIAQSDMKG+KEA+AAI G GVFGKLKFESGIHRVQ
Sbjct: 169 LFAMNIFKMYEKYAHNKGWKFDVVDIAQSDMKGFKEATAAILGVGVFGKLKFESGIHRVQ 228

Query: 241 RVPVTEKLGRVHTSAVSVAILPQADEVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRI 300
           RVPVTEKLGRVHTSAVSVAILPQADEVDVQLK EDLK+D YRSGGSGGQHAN T+SAVR+
Sbjct: 229 RVPVTEKLGRVHTSAVSVAILPQADEVDVQLKKEDLKIDFYRSGGSGGQHANKTSSAVRM 288

Query: 301 THIPTGIIVAIQDERSQHMNXXXXXXXXXXXXYEMERLRLHSNRSKLRSEQIGSGDRSER 360
           THIPTGI++AIQDERSQHMN            YE+ER RLHS+RSKLRS+QIGSGDRSER
Sbjct: 289 THIPTGIVIAIQDERSQHMNKAKALKVLCAKLYEIERTRLHSSRSKLRSDQIGSGDRSER 348

Query: 361 IRTYNFPQGRVTDHRVGITYHSIDDVMQGENLDVFIDALLLREEMDAVASFTSS 414
           IRTYNFPQGRVTDHRVGITYH+IDDVMQGE+LD FIDALLL+EEMDA+A+F SS
Sbjct: 349 IRTYNFPQGRVTDHRVGITYHNIDDVMQGESLDAFIDALLLKEEMDAIATFRSS 402


>Medtr7g108300.1 | peptide chain release factor 1 | HC |
           chr7:44051484-44058335 | 20130731
          Length = 416

 Score =  229 bits (585), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/318 (38%), Positives = 188/318 (59%), Gaps = 2/318 (0%)

Query: 61  RLSAIEHRSACLSNLLNQPE--ATPSEYARANKELRKLSGSVELINELRAKQKEIDGLKT 118
           +L + E     LS  L  P+  + PSEY +  + + +L   V L  + +  +K ++  + 
Sbjct: 57  KLESAEKTWKDLSVKLADPDIVSNPSEYQKLAQSVSELDVVVSLYQKFKDCEKTLEETQA 116

Query: 119 LMAESSEDKDMLSMATEEFGQAKEEERRLQNMLLKSLLPKDDADERDSILEVRAGSGGEE 178
           L  ++  D+DM  M + E     ++   L+  L   LLP D  DER+ +LEVRAG+GG+E
Sbjct: 117 LAKDAGNDQDMTEMISYEIESLSKQLSELEEKLKVLLLPSDPLDERNIMLEVRAGTGGDE 176

Query: 179 ASLFAMDIFKMYEKYAHKNGWKFEVVDIAQSDMKGYKEASAAIAGAGVFGKLKFESGIHR 238
           A ++A D+ +MYEK++  N WK   +  ++++  GYK     I G  V+ KLKFESG+HR
Sbjct: 177 AGIWAGDLVRMYEKFSELNSWKHSAISCSEAEKGGYKTYVMEIKGNRVYSKLKFESGVHR 236

Query: 239 VQRVPVTEKLGRVHTSAVSVAILPQADEVDVQLKNEDLKVDTYRSGGSGGQHANTTNSAV 298
           VQRVP+TE  GRVHTS  +VAI+P+ DEV+V +  +D++V T RSGG+GGQ+ N   +A+
Sbjct: 237 VQRVPLTETQGRVHTSTATVAIMPEVDEVEVVIDPKDIEVTTARSGGAGGQNVNKVETAI 296

Query: 299 RITHIPTGIIVAIQDERSQHMNXXXXXXXXXXXXYEMERLRLHSNRSKLRSEQIGSGDRS 358
            + H PTGI +   ++R+Q  N            YE++      +    R  Q+G+G RS
Sbjct: 297 DLVHKPTGIRIFCTEQRTQIQNKNLAFKLLRAKLYEIKVREQQESIRNQRKSQVGTGARS 356

Query: 359 ERIRTYNFPQGRVTDHRV 376
           E+IRTYN+   RVTDHR+
Sbjct: 357 EKIRTYNYKDNRVTDHRL 374


>Medtr7g112100.1 | peptide chain release factor 2 | HC |
           chr7:46081007-46085393 | 20130731
          Length = 475

 Score =  153 bits (386), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 161/306 (52%), Gaps = 16/306 (5%)

Query: 106 LRAKQKEIDGLKTLMAESSEDKDMLSMATEEFGQAKEEE--RRLQNMLLKS------LLP 157
           L  K KE++GL+    E  +D +M+ +A EE     E E  + L NM + +       L 
Sbjct: 164 LLGKMKEVNGLER---ELLDDIEMIKLAREENDSELELESMKALLNMRVNAKEKELEALL 220

Query: 158 KDDADERDSILEVRAGSGGEEASLFAMDIFKMYEKYAHKNGWKFEVVDIAQSDMKGYKEA 217
            D+ D R   +EV+AG+GG E+  +A  I +MY+ +A + G+K  V++    ++ G K A
Sbjct: 221 ADEQDSRSCYIEVQAGAGGTESMDWASMIMQMYKSWAQRRGYKVTVMEEMPGEIAGIKRA 280

Query: 218 SAAIAGAGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQ-ADE-VDVQLKNED 275
           +  + G   FG  K E G+HR+ R+   +   R HTS  +VA++P   DE   VQ+   D
Sbjct: 281 TIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPNLGDESSSVQINESD 340

Query: 276 LKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQDERSQHMNXXXXXXXXXXXXYEM 335
           L+++ +R+ G+GGQH NTT SAV+ITHIPTG+    Q+ERSQH N             ++
Sbjct: 341 LRIERFRASGAGGQHVNTTESAVKITHIPTGVTATCQNERSQHQNKASAMAVLQSRLNQI 400

Query: 336 ERLRLHSNRSKLRSEQIGSGDRSERIRTYNF-PQGRVTDHRVGITYHSIDDVMQGENLDV 394
           E  R  +  +   ++ +       +IR+Y   P   V D R        D V++G+ LD 
Sbjct: 401 EMAR-QAQLNAQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGD-LDG 458

Query: 395 FIDALL 400
           FI + L
Sbjct: 459 FIMSYL 464


>Medtr7g080430.1 | peptide chain release factor 2 | HC |
           chr7:30593686-30589146 | 20130731
          Length = 475

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 170/353 (48%), Gaps = 21/353 (5%)

Query: 55  LNIMEQRLSAIEHRSACLSNLLNQPEATPSEYARANKELRKLSG---SVELINELRAKQK 111
           L ++EQ L+ +E  ++C S   ++        A+A + L  L+     ++L+N+ + + +
Sbjct: 123 LQLLEQELAKLEEEASCSSFWDDR--------AKAQQTLSTLADVKEKIKLLNDYKTQVE 174

Query: 112 EIDGLKTLMAE-SSEDKDMLSMATEEFGQAKEEERRLQNMLLKSLLPKDDADERDSILEV 170
           + + +  L  E  S DK +   A+      KE  + +    L  LL     D+  +++ +
Sbjct: 175 DAETIVMLTEEMESVDKGLYEEAS---SLIKELNKSIDRFELTQLL-SGPYDKEGAVISI 230

Query: 171 RAGSGGEEASLFAMDIFKMYEKYAHKNGWKFEVVDIAQSDMKGYKEASAAIAGAGVFGKL 230
            AG+GG +A  +A  + +MY ++  K  +K  VV+ +  +  G K A+  + G   +G L
Sbjct: 231 TAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSATIEVEGRYAYGYL 290

Query: 231 KFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADE--VDVQLKNEDLKVDTYRSGGSGG 288
             E G HR+ R       G   TS   V ++P   E  ++V++  EDL++   R+GG GG
Sbjct: 291 SGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEESLNVEIPEEDLEISFSRAGGKGG 350

Query: 289 QHANTTNSAVRITHIPTGIIVAIQDERSQHMNXXXXXXXXXXXXYEMERLRLHSNRSKLR 348
           Q+ N   +AVRITHIPTG+ +   +ERSQ  N              +   +  +   ++R
Sbjct: 351 QNVNKVETAVRITHIPTGVTLRCTEERSQLANKIKALSRLKAKLLVIAEEQRATEFKQIR 410

Query: 349 SEQIGSGDRSERIRTYNF-PQGRVTDHRVGITYHSIDDVMQGENLDVFIDALL 400
            + +   +  ++IR Y F P   V D R G     I  V+ GE LD FI + L
Sbjct: 411 GDVV-KAEWGQQIRNYVFHPYKLVKDVRTGHETPDITSVIDGE-LDPFIKSYL 461


>Medtr1g041890.1 | peptide chain release factor, putative | HC |
           chr1:20209058-20203032 | 20130731
          Length = 548

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 20/242 (8%)

Query: 87  ARANKELRKLSGSVELIN---ELRAKQKEIDGLKTLMAESSEDKDMLSMATEEFGQAKEE 143
            ++N  L KL+ S ++++   +LR K +E   +K L   ++ D  +       + QA + 
Sbjct: 236 TKSNDILVKLANSAKVVDSLKDLRYKVEEAKLIKQLAEMNAIDYGL-------YKQAYDA 288

Query: 144 ERRLQNMLLK---SLLPKDDADERDSILEVRAGSGGEEASLFAMDIFKMYEKYAHKNGWK 200
              + N+L +   S L K   D   + L ++A +G   + L+A  + +MY  +A + G++
Sbjct: 289 SVDVSNILDQYEISKLLKGPFDMAGACLVIKAATG-IFSKLWAEQLLQMYLGWAKRQGYE 347

Query: 201 FEVVDIAQSDMKGYKEASAAIAGAGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAI 260
             +VD   ++  G   A+        +G L  E G+H + R    E   ++ TS  +V +
Sbjct: 348 GRIVDRCLTENGGINSATIEFEFECAYGYLLGEKGVHHLIRGSPNES-SQLETSTATVDV 406

Query: 261 LPQADE--VDVQLKNEDLKVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQDERSQH 318
           +P   E  +D+++ +EDL +    S    G+    T   V I HIPTGI V    ERSQ 
Sbjct: 407 IPLFLEKALDLEIDSEDLIIS---SPLIHGEQKRQTQRIVCIHHIPTGITVQSSGERSQF 463

Query: 319 MN 320
            N
Sbjct: 464 AN 465


>Medtr6g059330.1 | class I peptide chain release factor | HC |
           chr6:20369783-20372756 | 20130731
          Length = 250

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 4/56 (7%)

Query: 269 VQLKNEDL----KVDTYRSGGSGGQHANTTNSAVRITHIPTGIIVAIQDERSQHMN 320
           + L ++DL    ++ T+++ G GGQH N   SAVR+ H+PTGII    ++RSQHMN
Sbjct: 70  LDLTDDDLMRQCEMGTFKTSGPGGQHRNKRESAVRLKHLPTGIIAQAGEDRSQHMN 125