Miyakogusa Predicted Gene

Lj1g3v4830290.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4830290.1 tr|C1FIY8|C1FIY8_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_63177
,42.27,0.0000000005,Nefa_Nip30_N,NEFA-interacting nuclear protein
NIP30, N-terminal; SUBFAMILY NOT NAMED,NULL; NEFA-INTE,CUFF.33408.1
         (212 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g110620.1 | NEFA-interacting nuclear protein NIP30, putati...   338   2e-93

>Medtr7g110620.1 | NEFA-interacting nuclear protein NIP30, putative
           | HC | chr7:45339407-45334764 | 20130731
          Length = 212

 Score =  338 bits (867), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 169/205 (82%), Positives = 186/205 (90%), Gaps = 1/205 (0%)

Query: 9   PIRIMNFVSEDQLAESKRTRGERVEDGTAHRDRPLYEILKEQKDKKDAEFNERFKHRPPK 68
           PIR+MNFVSE+QLAESKRTRGERVEDGTAHRDRPL+EILKE KDKKDAEFNERFKHRPPK
Sbjct: 8   PIRMMNFVSEEQLAESKRTRGERVEDGTAHRDRPLFEILKENKDKKDAEFNERFKHRPPK 67

Query: 69  ALDEDETEFLDNYETTRREYEQKVADEEAQQIRSFQAAVAVQSNTVHEIKENPPLPIVQE 128
           ALDEDETEFLDNYE+T+REYEQK+ADEEAQQ+RSFQAA+A+QSNTVHE+KE   +  VQE
Sbjct: 68  ALDEDETEFLDNYESTKREYEQKLADEEAQQLRSFQAAIAMQSNTVHELKEKASVLAVQE 127

Query: 129 EKP-AGKRNPASRPLSMIIKVKPQTKKAKVDEGNAEEVSKARTTPVNDNNKSLELVQSLN 187
           EKP AGKR PASRPL+MIIKVKPQ KKAKVDEGN E+V KA  T VND +K LE VQ LN
Sbjct: 128 EKPAAGKRKPASRPLNMIIKVKPQAKKAKVDEGNTEDVPKAGITYVNDKSKPLEPVQPLN 187

Query: 188 GEADKSHEIAQTGLVSYSDESDDDL 212
           G AD+S+E+AQTGLVSYSDESDDDL
Sbjct: 188 GIADRSNEVAQTGLVSYSDESDDDL 212