Miyakogusa Predicted Gene

Lj1g3v4830120.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4830120.2 Non Characterized Hit- tr|K4AXF2|K4AXF2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,37.84,0.00000000000002,seg,NULL; coiled-coil,NULL; SNF7 -
RELATED,NULL; Snf7,Snf7,CUFF.33366.2
         (337 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g110820.1 | charged multivesicular body protein | HC | chr...   447   e-126
Medtr7g110820.2 | charged multivesicular body protein | HC | chr...   424   e-119

>Medtr7g110820.1 | charged multivesicular body protein | HC |
           chr7:45429963-45425537 | 20130731
          Length = 429

 Score =  447 bits (1149), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/335 (71%), Positives = 267/335 (79%), Gaps = 2/335 (0%)

Query: 2   RTLDLVDPRSGRVSQLFRKVGSLITKSATPPDIVAEEFVVVTAVLKDKAAEVVKHLSENH 61
           RT DLVDP  GR SQL RK+ +LI + ATP DI+AEE VV+  +LKDKAAEVVKHLSE+H
Sbjct: 94  RTGDLVDPTRGRFSQLVRKMTNLIIRPATP-DIMAEESVVLIPMLKDKAAEVVKHLSESH 152

Query: 62  WNSSCIITMKKFQDVCGGPDEASVILRYLSGCRTAQYLSVHKKEFVEGVKISLSTAVLSS 121
           WNSSCIITMKKFQ++CGGPDEASV+LRYLSGC T QYLSV K EFVEGVKISLS A LS 
Sbjct: 153 WNSSCIITMKKFQEICGGPDEASVMLRYLSGCGTTQYLSVLKNEFVEGVKISLSAAALSG 212

Query: 122 ISNLDYDVLYLIWTTEKLQQQLDVIDRRYELSRKSALASLHSGNKEVALRYVRELKLITQ 181
            SNLD DVLYLIWT EKLQQQLDVIDRR ELSRKSA+ASLHSGN+++ALRY RELKL+TQ
Sbjct: 213 ASNLDCDVLYLIWTIEKLQQQLDVIDRRCELSRKSAVASLHSGNRKLALRYARELKLVTQ 272

Query: 182 SREKCLSFLNRVEEVLSIISDAESTKKVSEAMQIGARAIKENKISVEDVDLCLRDLEESI 241
           SREKC S LNRVEEV  ++ DAESTK VSEAMQIGARAIKENKISVEDVD+CLRDL+ESI
Sbjct: 273 SREKCSSLLNRVEEVHGVVVDAESTKTVSEAMQIGARAIKENKISVEDVDICLRDLQESI 332

Query: 242 DSQKEVEKALEQTPSHAYVXXXXXXXXFKKLEQAFGEEVQVPAPEKTIANAEGSDTSGAA 301
           DSQKEVEKALEQTPS+  +         ++LE A  +E QV   EKT  + EG+ T  A+
Sbjct: 333 DSQKEVEKALEQTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTSEEGNATLEAS 392

Query: 302 EFISDAFSNLKLSDGPAERPRITQ-VSGSKKTANL 335
           E +SD  SNLKLSD P  + R T   S   KTANL
Sbjct: 393 ELLSDTLSNLKLSDRPVGKSRTTHAASEGHKTANL 427


>Medtr7g110820.2 | charged multivesicular body protein | HC |
           chr7:45429955-45425594 | 20130731
          Length = 317

 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/314 (71%), Positives = 252/314 (80%), Gaps = 2/314 (0%)

Query: 23  SLITKSATPPDIVAEEFVVVTAVLKDKAAEVVKHLSENHWNSSCIITMKKFQDVCGGPDE 82
           +LI + ATP DI+AEE VV+  +LKDKAAEVVKHLSE+HWNSSCIITMKKFQ++CGGPDE
Sbjct: 3   NLIIRPATP-DIMAEESVVLIPMLKDKAAEVVKHLSESHWNSSCIITMKKFQEICGGPDE 61

Query: 83  ASVILRYLSGCRTAQYLSVHKKEFVEGVKISLSTAVLSSISNLDYDVLYLIWTTEKLQQQ 142
           ASV+LRYLSGC T QYLSV K EFVEGVKISLS A LS  SNLD DVLYLIWT EKLQQQ
Sbjct: 62  ASVMLRYLSGCGTTQYLSVLKNEFVEGVKISLSAAALSGASNLDCDVLYLIWTIEKLQQQ 121

Query: 143 LDVIDRRYELSRKSALASLHSGNKEVALRYVRELKLITQSREKCLSFLNRVEEVLSIISD 202
           LDVIDRR ELSRKSA+ASLHSGN+++ALRY RELKL+TQSREKC S LNRVEEV  ++ D
Sbjct: 122 LDVIDRRCELSRKSAVASLHSGNRKLALRYARELKLVTQSREKCSSLLNRVEEVHGVVVD 181

Query: 203 AESTKKVSEAMQIGARAIKENKISVEDVDLCLRDLEESIDSQKEVEKALEQTPSHAYVXX 262
           AESTK VSEAMQIGARAIKENKISVEDVD+CLRDL+ESIDSQKEVEKALEQTPS+  +  
Sbjct: 182 AESTKTVSEAMQIGARAIKENKISVEDVDICLRDLQESIDSQKEVEKALEQTPSYTDIND 241

Query: 263 XXXXXXFKKLEQAFGEEVQVPAPEKTIANAEGSDTSGAAEFISDAFSNLKLSDGPAERPR 322
                  ++LE A  +E QV   EKT  + EG+ T  A+E +SD  SNLKLSD P  + R
Sbjct: 242 EDIEEELEELELALEKEAQVDTLEKTTTSEEGNATLEASELLSDTLSNLKLSDRPVGKSR 301

Query: 323 ITQ-VSGSKKTANL 335
            T   S   KTANL
Sbjct: 302 TTHAASEGHKTANL 315