Miyakogusa Predicted Gene

Lj1g3v4830100.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4830100.3 tr|A8IDN7|A8IDN7_CHLRE Pre-mRNA splicing factor
PRP38 family protein OS=Chlamydomonas reinhardtii
GN,52.81,8e-19,PRP38,Pre-mRNA-splicing factor 38;
UNCHARACTERIZED,Pre-mRNA-splicing factor 38,CUFF.33367.3
         (88 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g077180.2 | pre-mRNA-splicing factor | HC | chr5:32943383-...   189   5e-49
Medtr5g077180.1 | pre-mRNA-splicing factor | HC | chr5:32943383-...   189   5e-49

>Medtr5g077180.2 | pre-mRNA-splicing factor | HC |
          chr5:32943383-32936664 | 20130731
          Length = 433

 Score =  189 bits (480), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 85/88 (96%), Positives = 86/88 (97%)

Query: 1  MEIQTSGRPIGSLLEKVLCMIILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60
          MEIQTSGRPI SLLEKVLCM ILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR
Sbjct: 1  MEIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61 GPSTSFCLLYKFFTMKLTVKQMHGLLKH 88
          GPST+FCLLYKFFTMKLTVKQMHGLLKH
Sbjct: 61 GPSTAFCLLYKFFTMKLTVKQMHGLLKH 88


>Medtr5g077180.1 | pre-mRNA-splicing factor | HC |
          chr5:32943383-32936664 | 20130731
          Length = 433

 Score =  189 bits (480), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 85/88 (96%), Positives = 86/88 (97%)

Query: 1  MEIQTSGRPIGSLLEKVLCMIILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60
          MEIQTSGRPI SLLEKVLCM ILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR
Sbjct: 1  MEIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61 GPSTSFCLLYKFFTMKLTVKQMHGLLKH 88
          GPST+FCLLYKFFTMKLTVKQMHGLLKH
Sbjct: 61 GPSTAFCLLYKFFTMKLTVKQMHGLLKH 88