Miyakogusa Predicted Gene

Lj1g3v4819950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4819950.1 tr|A9P9X2|A9P9X2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_568700 PE=4
SV=1,71.43,2e-19,seg,NULL,CUFF.33350.1
         (65 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g111090.1 | bonsai protein | HC | chr7:45580673-45578720 |...    49   1e-06

>Medtr7g111090.1 | bonsai protein | HC | chr7:45580673-45578720 |
          20130731
          Length = 63

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 31/63 (49%)

Query: 1  MAEVSLGILIDVVDEEWMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVNEDKWHDLAL 60
          MAE+SLGILID+VDE+WM                               VN+D WHDLAL
Sbjct: 1  MAELSLGILIDIVDEDWMRDTLPQDDLPLPPTLVVRTDDTEDSNQEAQQVNKDAWHDLAL 60

Query: 61 GRE 63
          G+E
Sbjct: 61 GQE 63