Miyakogusa Predicted Gene

Lj1g3v4804100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4804100.1 tr|C1MUT1|C1MUT1_MICPC Mitochondrial tRNA import
complex OS=Micromonas pusilla (strain CCMP1545)
GN=,46.72,0.000000000003,UCR_14kD,Cytochrome d ubiquinol oxidase,
14kDa subunit; Q84M34_ORYSA_Q84M34;,Cytochrome d ubiquinol
,CUFF.33292.1
         (122 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g011880.1 | cytochrome B-c1 complex subunit 7 | HC | chr1:...   185   8e-48
Medtr1g011880.2 | cytochrome B-c1 complex subunit 7 | HC | chr1:...   144   2e-35

>Medtr1g011880.1 | cytochrome B-c1 complex subunit 7 | HC |
           chr1:2251690-2255411 | 20130731
          Length = 122

 Score =  185 bits (470), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 92/122 (75%), Positives = 97/122 (79%)

Query: 1   MASLLQSFIDPKKNWLARVHMKTISQXXXXXXXXXXXXXXXXXXXXIKEALNRLPKEVVD 60
           MASLLQ+ +DPKKNW A  HMK +S+                    IKEALNRLPKEVVD
Sbjct: 1   MASLLQAIVDPKKNWFAAQHMKAVSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPKEVVD 60

Query: 61  ARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTFVKKERAEREALGGLPLYQRT 120
           ARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTFVK+ERAEREALGGLPLYQRT
Sbjct: 61  ARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTFVKRERAEREALGGLPLYQRT 120

Query: 121 LP 122
           LP
Sbjct: 121 LP 122


>Medtr1g011880.2 | cytochrome B-c1 complex subunit 7 | HC |
           chr1:2251768-2253786 | 20130731
          Length = 111

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 76/101 (75%)

Query: 1   MASLLQSFIDPKKNWLARVHMKTISQXXXXXXXXXXXXXXXXXXXXIKEALNRLPKEVVD 60
           MASLLQ+ +DPKKNW A  HMK +S+                    IKEALNRLPKEVVD
Sbjct: 1   MASLLQAIVDPKKNWFAAQHMKAVSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPKEVVD 60

Query: 61  ARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTFV 101
           ARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTFV
Sbjct: 61  ARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTFV 101