Miyakogusa Predicted Gene

Lj1g3v4790800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4790800.1 Non Characterized Hit- tr|I1N1V4|I1N1V4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.18197
PE,60.4,6e-19,seg,NULL,CUFF.33267.1
         (98 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g043450.1 | Pre-rRNA-processing protein TSR2, motif protei...    81   2e-16

>Medtr8g043450.1 | Pre-rRNA-processing protein TSR2, motif protein |
           HC | chr8:16680605-16677438 | 20130731
          Length = 206

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 6/103 (5%)

Query: 1   MGMHEECLESNFRSIEILKEANLKQAAHPRVAQIVXXXXXXXXXXXXXIIGASNSSNMDV 60
           M M+ ECLE NF S+E L+EA+   AA+  V +IV             I    NS+NMDV
Sbjct: 99  MIMYGECLEGNFSSVERLREASRNPAAYSGVQKIVNGNGDEDDDSDENIE-DDNSANMDV 157

Query: 61  DIPKSESDMNSVNRPVNGTLP-----KVAAEADDEWTVVSNRR 98
           DIPKSES++NS+N+ VNG+ P       + E DD W+VVS R+
Sbjct: 158 DIPKSESNLNSMNKTVNGSQPDNPGEDNSGEGDDGWSVVSRRK 200