Miyakogusa Predicted Gene

Lj1g3v4790750.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4790750.1 Non Characterized Hit- tr|I3T6C3|I3T6C3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.47,0,NAD(P)-binding Rossmann-fold domains,NULL; seg,NULL;
NAD_binding_10,NULL; no description,NAD(P)-bind,CUFF.33274.1
         (483 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g111860.1 | stem-loop-binding protein of 41 kDa protein B ...   655   0.0  
Medtr1g072260.1 | stem-loop-binding protein of 41 kDa protein A ...   174   1e-43

>Medtr7g111860.1 | stem-loop-binding protein of 41 kDa protein B |
           HC | chr7:45955304-45952399 | 20130731
          Length = 378

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/378 (85%), Positives = 337/378 (89%), Gaps = 1/378 (0%)

Query: 107 MARLVVPQQNQLSFSPLASSLSDFSGTRLQTQIQFRRKAWQPKG-FHVSASSTKKILIMG 165
           MARLV  QQNQLSF PLASSLSDF+G RLQT IQ +RK WQPKG   VSASSTKKILIMG
Sbjct: 1   MARLVALQQNQLSFPPLASSLSDFNGARLQTHIQLKRKTWQPKGSLIVSASSTKKILIMG 60

Query: 166 GTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGEXXXXXXXXXXKIKHLKGDRKDYD 225
           GTRFIGVFLSR LVKEGHQVTLFTRGKAPITQQLPGE          KI HLKGDRKDYD
Sbjct: 61  GTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYD 120

Query: 226 FVKSSLSAEGFDVVYDINGREAEEVEPIIEALPNLEQFIYCSSAGVYLKSDLLPHAEVDA 285
           FVKSSLSAEGFDVVYDINGREAEEVEPI++ALPNLEQFIYCSSAGVYLKSDLLPHAE+DA
Sbjct: 121 FVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDA 180

Query: 286 VDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGS 345
           VDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGS
Sbjct: 181 VDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGS 240

Query: 346 GIQITQLGHVKDLATVFVQVLGNDKASKQVFNIAGDKYVTFDGLARACAKAGGFPEPEII 405
           GIQITQLGHVKDLAT F++VLGN+KASKQ+FNI+GDKYVTFDGLARACAKAGGFPEPEII
Sbjct: 241 GIQITQLGHVKDLATAFLKVLGNEKASKQIFNISGDKYVTFDGLARACAKAGGFPEPEII 300

Query: 406 HYNXXXXXXXXXXXXXXXXQHFFASVDKAKSVLGWEPEFGLVEGLADSYNLDFGRGTFRK 465
           HYN                QHFFASV+KAKSVLG EP++GLVEGL DSYNLDFGRGTFRK
Sbjct: 301 HYNPKDFDFGKKKSFPFRDQHFFASVEKAKSVLGLEPDYGLVEGLTDSYNLDFGRGTFRK 360

Query: 466 EADFSTDDIILGKSLVSV 483
           EADFSTDDIILGKSLVSV
Sbjct: 361 EADFSTDDIILGKSLVSV 378


>Medtr1g072260.1 | stem-loop-binding protein of 41 kDa protein A |
           HC | chr1:32066134-32063750 | 20130731
          Length = 401

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 161/330 (48%), Gaps = 14/330 (4%)

Query: 154 SASSTKKILIM----GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGEXXXXXXX 209
           SA+  KK+LI+    GG   IG + ++ L+  GH VT+ T G     +            
Sbjct: 70  SAAEKKKVLIINTNSGGHAVIGFYFAKELLGAGHSVTILTVGDESSDKMKKPPFNRFSEI 129

Query: 210 XXXKIKHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPIIE--ALPNLEQFIYCS 267
                  + G+  D   V S +  E FDVV D NG++ E V P+I+       +QF++ S
Sbjct: 130 VSAGGSTVWGNPAD---VGSVVGGEAFDVVLDNNGKDLESVRPVIDWAKSAGAKQFLFIS 186

Query: 268 SAGVYLKSDLLPHAEVDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVE 327
           SAG+Y  +D  PH E DAV   + H G    E  ++    +W   RP Y+ G  N    E
Sbjct: 187 SAGIYKTTDEPPHVEGDAVKADAGHVG---VEKYIEETFDSWAVFRPQYMTGSGNNKDCE 243

Query: 328 EWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATVFVQVLGN-DKASKQVFNIAGDKYVTF 386
           EWFF R+   RP+ IPGSG+Q+T + HVKDL+++    + N D A+  +FN   D+ VT 
Sbjct: 244 EWFFDRIVRDRPVLIPGSGLQLTNISHVKDLSSMLTLAVENPDAANHSIFNCVSDRAVTL 303

Query: 387 DGLARACAKAGGFPEPEIIHYNXXXXXXXXXXXXXXXXQHFFASVDKAKSVLGWEPEFGL 446
           +G+A+ CA+A G P   I+HY+                 HF+A    AK+ LGW     L
Sbjct: 304 NGIAKLCAQAAGRPV-NIVHYDPKAIGIDAKKAFPFRNVHFYAEPRAAKTKLGWSSTTNL 362

Query: 447 VEGLADSYNLDFGRGTFRKEADFSTDDIIL 476
            E L + +      G  +K   F  DD IL
Sbjct: 363 PEDLKERFEEYIKIGRDKKPIKFELDDKIL 392