Miyakogusa Predicted Gene

Lj1g3v4789600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4789600.1 Non Characterized Hit- tr|D7UA24|D7UA24_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,82.7,0,no
description,Peptide chain release factor; PEPTIDE CHAIN RELEASE FACTOR
2,Peptide chain release fa,CUFF.33250.1
         (474 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g112100.1 | peptide chain release factor 2 | HC | chr7:460...   704   0.0  
Medtr7g080430.1 | peptide chain release factor 2 | HC | chr7:305...   243   3e-64
Medtr7g110570.1 | peptide chain release factor 1 | HC | chr7:453...   160   2e-39
Medtr7g110570.2 | peptide chain release factor 1 | HC | chr7:453...   160   3e-39
Medtr1g041890.1 | peptide chain release factor, putative | HC | ...   145   7e-35
Medtr7g108300.1 | peptide chain release factor 1 | HC | chr7:440...   116   5e-26
Medtr6g059330.1 | class I peptide chain release factor | HC | ch...    61   2e-09

>Medtr7g112100.1 | peptide chain release factor 2 | HC |
           chr7:46081007-46085393 | 20130731
          Length = 475

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/473 (74%), Positives = 384/473 (81%), Gaps = 5/473 (1%)

Query: 4   LLRRSLRITVSSL--FHSKLVGDSHHALASSTWFWYRXXXXXXXXXXXXXCFNSNGSRQV 61
           L RRSLRIT ++   F SKLVG+   +  S T F  R                   S  +
Sbjct: 6   LRRRSLRITTTTFSSFLSKLVGNLSDS-PSPTLFSCRHLSHALPFFSSTWLSRDAYSHGL 64

Query: 62  PQFPSLVRYWASQPATTEHYSTSDGLTVDGILSNNWTILDENDGDWRSHAAALAQSIHLI 121
              P+  R+WASQPA  EH STSDGLT+ GIL+ NW ILDEND DW+SHA+A+AQSIHLI
Sbjct: 65  LS-PTQARFWASQPAAAEH-STSDGLTIQGILAKNWPILDENDSDWKSHASAIAQSIHLI 122

Query: 122 KRRLQWTKLKVRLEMLSAQLNKPDLWDDPVHAGKISREHGSLLGKMKEVNALERELLEHI 181
           KRRLQW KLKVRL+MLSAQLNK DLWDDPV AGKI+REHGSLLGKMKEVN LERELL+ I
Sbjct: 123 KRRLQWKKLKVRLDMLSAQLNKEDLWDDPVRAGKINREHGSLLGKMKEVNGLERELLDDI 182

Query: 182 EMIKLARDENDXXXXXXXXXXXXDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTES 241
           EMIKLAR+END            +MR N            E DS SCYIEVQ GAGGTES
Sbjct: 183 EMIKLAREENDSELELESMKALLNMRVNAKEKELEALLADEQDSRSCYIEVQAGAGGTES 242

Query: 242 MDWAAMVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEVGVHRL 301
           MDWA+M+MQMYKSWAQRRGYKVTV++EMPGEIAGIKRATIKVDGEFAFGYAKAE+GVHRL
Sbjct: 243 MDWASMIMQMYKSWAQRRGYKVTVMEEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRL 302

Query: 302 VRISPFDSAKRRHTSFAAVAVIPILGDGSTRVQINESDLRVERFRAGGAGGQHVNTTESA 361
           VRISPFDS KRRHTSFAAVAVIP LGD S+ VQINESDLR+ERFRA GAGGQHVNTTESA
Sbjct: 303 VRISPFDSNKRRHTSFAAVAVIPNLGDESSSVQINESDLRIERFRASGAGGQHVNTTESA 362

Query: 362 VRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQTQMNAQHTQSLTDITWG 421
           V+I HIPTGVTATCQNERSQHQNKASAMAVLQSRL+Q+EMARQ Q+NAQHTQSLTDITWG
Sbjct: 363 VKITHIPTGVTATCQNERSQHQNKASAMAVLQSRLNQIEMARQAQLNAQHTQSLTDITWG 422

Query: 422 SQIRSYVLHPYQMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKNEGDA 474
           SQIRSYVLHPY+MVKDLRTNYEVSDPDSVLEGDLDGFI+SYLSASLDKNE DA
Sbjct: 423 SQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFIMSYLSASLDKNEDDA 475


>Medtr7g080430.1 | peptide chain release factor 2 | HC |
           chr7:30593686-30589146 | 20130731
          Length = 475

 Score =  243 bits (620), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 201/360 (55%), Gaps = 9/360 (2%)

Query: 113 ALAQSIHLIKRRLQWTKLKVRLEMLSAQLNKPD-------LWDDPVHAGKISREHGSLLG 165
           +L + + +  +R++  +    L++L  +L K +        WDD   A +       +  
Sbjct: 102 SLRKDVEIASQRVKEIRESSGLQLLEQELAKLEEEASCSSFWDDRAKAQQTLSTLADVKE 161

Query: 166 KMKEVNALEREL--LEHIEMIKLARDENDXXXXXXXXXXXXDMRRNXXXXXXXXXXXGEH 223
           K+K +N  + ++   E I M+    +  D            ++ ++           G +
Sbjct: 162 KIKLLNDYKTQVEDAETIVMLTEEMESVDKGLYEEASSLIKELNKSIDRFELTQLLSGPY 221

Query: 224 DSCSCYIEVQGGAGGTESMDWAAMVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATIKV 283
           D     I +  GAGGT++ DWA M+++MY  W +++ YK  VV++  GE AGIK ATI+V
Sbjct: 222 DKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSATIEV 281

Query: 284 DGEFAFGYAKAEVGVHRLVRISPFDSAKRRHTSFAAVAVIPILGDGSTRVQINESDLRVE 343
           +G +A+GY   E G HR+VR SPF+S   R TSF+ V V+P+L + S  V+I E DL + 
Sbjct: 282 EGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEESLNVEIPEEDLEIS 341

Query: 344 RFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMAR 403
             RAGG GGQ+VN  E+AVRI HIPTGVT  C  ERSQ  NK  A++ L+++L  +   +
Sbjct: 342 FSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERSQLANKIKALSRLKAKLLVIAEEQ 401

Query: 404 QTQMNAQHTQSLTDITWGSQIRSYVLHPYQMVKDLRTNYEVSDPDSVLEGDLDGFILSYL 463
           +     Q    +    WG QIR+YV HPY++VKD+RT +E  D  SV++G+LD FI SYL
Sbjct: 402 RATEFKQIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTGHETPDITSVIDGELDPFIKSYL 461


>Medtr7g110570.1 | peptide chain release factor 1 | HC |
           chr7:45311012-45315116 | 20130731
          Length = 438

 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/256 (37%), Positives = 148/256 (57%), Gaps = 15/256 (5%)

Query: 224 DSCSCYIEVQGGAGGTESMDWAAMVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATIKV 283
           D   C +EV+ G GG E+  +A  + +MY+ +A  +G+K  VVD    ++ G K AT  +
Sbjct: 156 DERDCILEVRAGTGGEEASLFAMNIFKMYEKYAHNKGWKFDVVDIAQSDMKGFKEATAAI 215

Query: 284 DGEFAFGYAKAEVGVHRLVRISPFDSAKRRHTSFAAVAVIPILGDGSTRVQINESDLRVE 343
            G   FG  K E G+HR+ R+   +   R HTS  +VA++P   +    VQ+ + DL+++
Sbjct: 216 LGVGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADE--VDVQLKKEDLKID 273

Query: 344 RFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMAR 403
            +R+GG+GGQH N T SAVR+ HIPTG+    Q+ERSQH NKA A+ VL ++L ++E   
Sbjct: 274 FYRSGGSGGQHANKTSSAVRMTHIPTGIVIAIQDERSQHMNKAKALKVLCAKLYEIE--- 330

Query: 404 QTQMNAQHTQSLTD-ITWG---SQIRSYVLHPYQMVKDLRTNYEVSDPDSVLEGD-LDGF 458
           +T++++  ++  +D I  G    +IR+Y   P   V D R      + D V++G+ LD F
Sbjct: 331 RTRLHSSRSKLRSDQIGSGDRSERIRTYNF-PQGRVTDHRVGITYHNIDDVMQGESLDAF 389

Query: 459 ILSYLSASLDKNEGDA 474
           I     A L K E DA
Sbjct: 390 I----DALLLKEEMDA 401


>Medtr7g110570.2 | peptide chain release factor 1 | HC |
           chr7:45310948-45315157 | 20130731
          Length = 403

 Score =  160 bits (405), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/256 (37%), Positives = 148/256 (57%), Gaps = 15/256 (5%)

Query: 224 DSCSCYIEVQGGAGGTESMDWAAMVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATIKV 283
           D   C +EV+ G GG E+  +A  + +MY+ +A  +G+K  VVD    ++ G K AT  +
Sbjct: 150 DERDCILEVRAGTGGEEASLFAMNIFKMYEKYAHNKGWKFDVVDIAQSDMKGFKEATAAI 209

Query: 284 DGEFAFGYAKAEVGVHRLVRISPFDSAKRRHTSFAAVAVIPILGDGSTRVQINESDLRVE 343
            G   FG  K E G+HR+ R+   +   R HTS  +VA++P   +    VQ+ + DL+++
Sbjct: 210 LGVGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADE--VDVQLKKEDLKID 267

Query: 344 RFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMAR 403
            +R+GG+GGQH N T SAVR+ HIPTG+    Q+ERSQH NKA A+ VL ++L ++E   
Sbjct: 268 FYRSGGSGGQHANKTSSAVRMTHIPTGIVIAIQDERSQHMNKAKALKVLCAKLYEIE--- 324

Query: 404 QTQMNAQHTQSLTD-ITWG---SQIRSYVLHPYQMVKDLRTNYEVSDPDSVLEGD-LDGF 458
           +T++++  ++  +D I  G    +IR+Y   P   V D R      + D V++G+ LD F
Sbjct: 325 RTRLHSSRSKLRSDQIGSGDRSERIRTYNF-PQGRVTDHRVGITYHNIDDVMQGESLDAF 383

Query: 459 ILSYLSASLDKNEGDA 474
           I     A L K E DA
Sbjct: 384 I----DALLLKEEMDA 395


>Medtr1g041890.1 | peptide chain release factor, putative | HC |
           chr1:20209058-20203032 | 20130731
          Length = 548

 Score =  145 bits (367), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 165/325 (50%), Gaps = 14/325 (4%)

Query: 145 DLWDDPVHAGKISREHGSLLGKMKEVNALE--RELLEHIEMIKLARDEN--DXXXXXXXX 200
           DLWDDP  +  I  +   L    K V++L+  R  +E  ++IK   + N  D        
Sbjct: 230 DLWDDPTKSNDILVK---LANSAKVVDSLKDLRYKVEEAKLIKQLAEMNAIDYGLYKQAY 286

Query: 201 XXXXDMRRNXXXXXXXXXXXGEHDSCSCYIEVQGGAGGTESMDWAAMVMQMYKSWAQRRG 260
               D+              G  D     + ++  A G  S  WA  ++QMY  WA+R+G
Sbjct: 287 DASVDVSNILDQYEISKLLKGPFDMAGACLVIKA-ATGIFSKLWAEQLLQMYLGWAKRQG 345

Query: 261 YKVTVVDEMPGEIAGIKRATIKVDGEFAFGYAKAEVGVHRLVRISPFDSAKRRHTSFAAV 320
           Y+  +VD    E  GI  ATI+ + E A+GY   E GVH L+R SP +S++   TS A V
Sbjct: 346 YEGRIVDRCLTENGGINSATIEFEFECAYGYLLGEKGVHHLIRGSPNESSQ-LETSTATV 404

Query: 321 AVIPILGDGSTRVQINESDLRVERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERS 380
            VIP+  + +  ++I+  DL +    +    G+    T+  V I HIPTG+T     ERS
Sbjct: 405 DVIPLFLEKALDLEIDSEDLIIS---SPLIHGEQKRQTQRIVCIHHIPTGITVQSSGERS 461

Query: 381 QHQNKASAMAVLQSRLDQLEMARQT-QMNAQHTQSLTDITWGSQIRSYVLHPYQMVKDLR 439
           Q  NK  A+  L+++L  + + +    +N      + ++ W  + R YV HPY++V D++
Sbjct: 462 QFANKMKALNRLKAKLQVIAIEQGVGSINGIVKDKIVNL-WEEKTRRYVSHPYKLVHDVK 520

Query: 440 TNYEVSDPDSVLEGDLDGFILSYLS 464
           T+ E+SD +SVL+G++   I ++++
Sbjct: 521 TDIEMSDLNSVLDGNIGPLIAAHIN 545


>Medtr7g108300.1 | peptide chain release factor 1 | HC |
           chr7:44051484-44058335 | 20130731
          Length = 416

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 114/205 (55%), Gaps = 3/205 (1%)

Query: 224 DSCSCYIEVQGGAGGTESMDWAAMVMQMYKSWAQRRGYKVTVVDEMPGEIAGIKRATIKV 283
           D  +  +EV+ G GG E+  WA  +++MY+ +++   +K + +     E  G K   +++
Sbjct: 160 DERNIMLEVRAGTGGDEAGIWAGDLVRMYEKFSELNSWKHSAISCSEAEKGGYKTYVMEI 219

Query: 284 DGEFAFGYAKAEVGVHRLVRISPFDSAKRRHTSFAAVAVIPILGDGSTRVQINESDLRVE 343
            G   +   K E GVHR+ R+   ++  R HTS A VA++P + +    V I+  D+ V 
Sbjct: 220 KGNRVYSKLKFESGVHRVQRVPLTETQGRVHTSTATVAIMPEVDE--VEVVIDPKDIEVT 277

Query: 344 RFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMAR 403
             R+GGAGGQ+VN  E+A+ +VH PTG+   C  +R+Q QNK  A  +L+++L ++++  
Sbjct: 278 TARSGGAGGQNVNKVETAIDLVHKPTGIRIFCTEQRTQIQNKNLAFKLLRAKLYEIKVRE 337

Query: 404 QTQ-MNAQHTQSLTDITWGSQIRSY 427
           Q + +  Q    +       +IR+Y
Sbjct: 338 QQESIRNQRKSQVGTGARSEKIRTY 362


>Medtr6g059330.1 | class I peptide chain release factor | HC |
           chr6:20369783-20372756 | 20130731
          Length = 250

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 345 FRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQ 404
           F+  G GGQH N  ESAVR+ H+PTG+ A    +RSQH N+ASA+  L+S L  L++ + 
Sbjct: 86  FKTSGPGGQHRNKRESAVRLKHLPTGIIAQAGEDRSQHMNRASAIKRLRS-LIALKVRKT 144

Query: 405 TQMNA 409
             ++A
Sbjct: 145 VDLDA 149