Miyakogusa Predicted Gene

Lj1g3v4766290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4766290.1 Non Characterized Hit- tr|F6H6U2|F6H6U2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,37.75,0.000000000000007,Ribonuclease H-like,Ribonuclease H-like
domain; no description,NULL; no description,Exonuclease;
seg,CUFF.33219.1
         (332 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g112320.1 | DNA polymerase III, epsilon subunit-like prote...   419   e-117
Medtr7g112320.2 | DNA polymerase III, epsilon subunit-like prote...   419   e-117
Medtr7g112320.6 | DNA polymerase III, epsilon subunit-like prote...   352   4e-97
Medtr7g112320.4 | DNA polymerase III, epsilon subunit-like prote...   242   4e-64
Medtr7g112320.5 | DNA polymerase III, epsilon subunit-like prote...   241   7e-64
Medtr7g112320.3 | DNA polymerase III, epsilon subunit-like prote...   241   7e-64

>Medtr7g112320.1 | DNA polymerase III, epsilon subunit-like protein
           | HC | chr7:46140775-46136943 | 20130731
          Length = 332

 Score =  419 bits (1077), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/336 (64%), Positives = 247/336 (73%), Gaps = 8/336 (2%)

Query: 1   MKTGSMIFSLLQLPRCRIHSLANYWGETXXX-XXXXXXXXXIRLLSSRINGLQEGHRKKW 59
           MKTGSMIFS LQ+PRCR+HSLAN  G+T             +RLL SRI GLQ GHRKKW
Sbjct: 1   MKTGSMIFSFLQVPRCRLHSLANNCGQTFHSFSNICENNSSVRLLGSRIYGLQGGHRKKW 60

Query: 60  TRRPITTNTEGKGGTKSRSTKHEIXXXXXXXXXXXXXNKTQLGEFQDIQYCDV-KEIAQK 118
           TRRPITTNTEG  GTKSRSTK EI              KTQLG+F +IQYCD+ +EIAQ 
Sbjct: 61  TRRPITTNTEGSAGTKSRSTKQEILSETISTSSTVNVKKTQLGQFPEIQYCDIHQEIAQN 120

Query: 119 KNLSSLVTVIAFDIETTGCGAKKHRSIEIALRDRQGGENSTFQTLVNPQRYVPNSDVHGI 178
           K+LSSLVTVI FDIETTG   +  R IEIALRD QGG NSTFQT VNPQR V NS +HGI
Sbjct: 121 KDLSSLVTVIVFDIETTGFSRENERIIEIALRDLQGGPNSTFQTFVNPQRSVYNSHIHGI 180

Query: 179 TNQMVNSPDVPRMEDLIPILLHYVRSREKPGGYVLWVAHNARSFDVPFFINELGRSSVKI 238
           T QMV+ P VPRMEDL+PIL HYV+SREKP GYVLWV HNAR FDVPF INE  R S +I
Sbjct: 181 TTQMVSRPGVPRMEDLVPILFHYVKSREKPRGYVLWVGHNARVFDVPFIINEFRRCSTQI 240

Query: 239 PSNWLFLDTLPLGRELMMKLKAESEEKKPPANLAALCEHYNVKLNGAAHRAMVDVDALSV 298
           P NWLF+DTLPL R+LM   K+E   K P  +L +L + Y +K++G AHRAM DV+ LS+
Sbjct: 241 PPNWLFVDTLPLARQLM---KSEG-TKLPSVSLDSLRKFYEIKVDGPAHRAMEDVNTLSL 296

Query: 299 IFSRLTFDLKLTLSDLVEKSFQESDI--TKKKKNSD 332
           I  +LT DLKLTLS LVEKSF E+DI  +KKKKNS+
Sbjct: 297 ILPKLTCDLKLTLSGLVEKSFTEADIINSKKKKNSN 332


>Medtr7g112320.2 | DNA polymerase III, epsilon subunit-like protein
           | HC | chr7:46140775-46136943 | 20130731
          Length = 332

 Score =  419 bits (1077), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/336 (64%), Positives = 247/336 (73%), Gaps = 8/336 (2%)

Query: 1   MKTGSMIFSLLQLPRCRIHSLANYWGETXXX-XXXXXXXXXIRLLSSRINGLQEGHRKKW 59
           MKTGSMIFS LQ+PRCR+HSLAN  G+T             +RLL SRI GLQ GHRKKW
Sbjct: 1   MKTGSMIFSFLQVPRCRLHSLANNCGQTFHSFSNICENNSSVRLLGSRIYGLQGGHRKKW 60

Query: 60  TRRPITTNTEGKGGTKSRSTKHEIXXXXXXXXXXXXXNKTQLGEFQDIQYCDV-KEIAQK 118
           TRRPITTNTEG  GTKSRSTK EI              KTQLG+F +IQYCD+ +EIAQ 
Sbjct: 61  TRRPITTNTEGSAGTKSRSTKQEILSETISTSSTVNVKKTQLGQFPEIQYCDIHQEIAQN 120

Query: 119 KNLSSLVTVIAFDIETTGCGAKKHRSIEIALRDRQGGENSTFQTLVNPQRYVPNSDVHGI 178
           K+LSSLVTVI FDIETTG   +  R IEIALRD QGG NSTFQT VNPQR V NS +HGI
Sbjct: 121 KDLSSLVTVIVFDIETTGFSRENERIIEIALRDLQGGPNSTFQTFVNPQRSVYNSHIHGI 180

Query: 179 TNQMVNSPDVPRMEDLIPILLHYVRSREKPGGYVLWVAHNARSFDVPFFINELGRSSVKI 238
           T QMV+ P VPRMEDL+PIL HYV+SREKP GYVLWV HNAR FDVPF INE  R S +I
Sbjct: 181 TTQMVSRPGVPRMEDLVPILFHYVKSREKPRGYVLWVGHNARVFDVPFIINEFRRCSTQI 240

Query: 239 PSNWLFLDTLPLGRELMMKLKAESEEKKPPANLAALCEHYNVKLNGAAHRAMVDVDALSV 298
           P NWLF+DTLPL R+LM   K+E   K P  +L +L + Y +K++G AHRAM DV+ LS+
Sbjct: 241 PPNWLFVDTLPLARQLM---KSEG-TKLPSVSLDSLRKFYEIKVDGPAHRAMEDVNTLSL 296

Query: 299 IFSRLTFDLKLTLSDLVEKSFQESDI--TKKKKNSD 332
           I  +LT DLKLTLS LVEKSF E+DI  +KKKKNS+
Sbjct: 297 ILPKLTCDLKLTLSGLVEKSFTEADIINSKKKKNSN 332


>Medtr7g112320.6 | DNA polymerase III, epsilon subunit-like protein
           | HC | chr7:46140775-46136943 | 20130731
          Length = 266

 Score =  352 bits (902), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 174/257 (67%), Positives = 191/257 (74%), Gaps = 2/257 (0%)

Query: 1   MKTGSMIFSLLQLPRCRIHSLANYWGETXXXXXXX-XXXXXIRLLSSRINGLQEGHRKKW 59
           MKTGSMIFS LQ+PRCR+HSLAN  G+T             +RLL SRI GLQ GHRKKW
Sbjct: 1   MKTGSMIFSFLQVPRCRLHSLANNCGQTFHSFSNICENNSSVRLLGSRIYGLQGGHRKKW 60

Query: 60  TRRPITTNTEGKGGTKSRSTKHEIXXXXXXXXXXXXXNKTQLGEFQDIQYCDV-KEIAQK 118
           TRRPITTNTEG  GTKSRSTK EI              KTQLG+F +IQYCD+ +EIAQ 
Sbjct: 61  TRRPITTNTEGSAGTKSRSTKQEILSETISTSSTVNVKKTQLGQFPEIQYCDIHQEIAQN 120

Query: 119 KNLSSLVTVIAFDIETTGCGAKKHRSIEIALRDRQGGENSTFQTLVNPQRYVPNSDVHGI 178
           K+LSSLVTVI FDIETTG   +  R IEIALRD QGG NSTFQT VNPQR V NS +HGI
Sbjct: 121 KDLSSLVTVIVFDIETTGFSRENERIIEIALRDLQGGPNSTFQTFVNPQRSVYNSHIHGI 180

Query: 179 TNQMVNSPDVPRMEDLIPILLHYVRSREKPGGYVLWVAHNARSFDVPFFINELGRSSVKI 238
           T QMV+ P VPRMEDL+PIL HYV+SREKP GYVLWV HNAR FDVPF INE  R S +I
Sbjct: 181 TTQMVSRPGVPRMEDLVPILFHYVKSREKPRGYVLWVGHNARVFDVPFIINEFRRCSTQI 240

Query: 239 PSNWLFLDTLPLGRELM 255
           P NWLF+DTLPL R+LM
Sbjct: 241 PPNWLFVDTLPLARQLM 257


>Medtr7g112320.4 | DNA polymerase III, epsilon subunit-like protein
           | HC | chr7:46140772-46137545 | 20130731
          Length = 204

 Score =  242 bits (617), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 137/193 (70%), Gaps = 2/193 (1%)

Query: 1   MKTGSMIFSLLQLPRCRIHSLANYWGETXXX-XXXXXXXXXIRLLSSRINGLQEGHRKKW 59
           MKTGSMIFS LQ+PRCR+HSLAN  G+T             +RLL SRI GLQ GHRKKW
Sbjct: 1   MKTGSMIFSFLQVPRCRLHSLANNCGQTFHSFSNICENNSSVRLLGSRIYGLQGGHRKKW 60

Query: 60  TRRPITTNTEGKGGTKSRSTKHEIXXXXXXXXXXXXXNKTQLGEFQDIQYCDV-KEIAQK 118
           TRRPITTNTEG  GTKSRSTK EI              KTQLG+F +IQYCD+ +EIAQ 
Sbjct: 61  TRRPITTNTEGSAGTKSRSTKQEILSETISTSSTVNVKKTQLGQFPEIQYCDIHQEIAQN 120

Query: 119 KNLSSLVTVIAFDIETTGCGAKKHRSIEIALRDRQGGENSTFQTLVNPQRYVPNSDVHGI 178
           K+LSSLVTVI FDIETTG   +  R IEIALRD QGG NSTFQT VNPQR V NS +HGI
Sbjct: 121 KDLSSLVTVIVFDIETTGFSRENERIIEIALRDLQGGPNSTFQTFVNPQRSVYNSHIHGI 180

Query: 179 TNQMVNSPDVPRM 191
           T QMV+ P VPR 
Sbjct: 181 TTQMVSRPGVPRF 193


>Medtr7g112320.5 | DNA polymerase III, epsilon subunit-like protein
           | HC | chr7:46140775-46137072 | 20130731
          Length = 192

 Score =  241 bits (615), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 137/192 (71%), Gaps = 2/192 (1%)

Query: 1   MKTGSMIFSLLQLPRCRIHSLANYWGETXXX-XXXXXXXXXIRLLSSRINGLQEGHRKKW 59
           MKTGSMIFS LQ+PRCR+HSLAN  G+T             +RLL SRI GLQ GHRKKW
Sbjct: 1   MKTGSMIFSFLQVPRCRLHSLANNCGQTFHSFSNICENNSSVRLLGSRIYGLQGGHRKKW 60

Query: 60  TRRPITTNTEGKGGTKSRSTKHEIXXXXXXXXXXXXXNKTQLGEFQDIQYCDV-KEIAQK 118
           TRRPITTNTEG  GTKSRSTK EI              KTQLG+F +IQYCD+ +EIAQ 
Sbjct: 61  TRRPITTNTEGSAGTKSRSTKQEILSETISTSSTVNVKKTQLGQFPEIQYCDIHQEIAQN 120

Query: 119 KNLSSLVTVIAFDIETTGCGAKKHRSIEIALRDRQGGENSTFQTLVNPQRYVPNSDVHGI 178
           K+LSSLVTVI FDIETTG   +  R IEIALRD QGG NSTFQT VNPQR V NS +HGI
Sbjct: 121 KDLSSLVTVIVFDIETTGFSRENERIIEIALRDLQGGPNSTFQTFVNPQRSVYNSHIHGI 180

Query: 179 TNQMVNSPDVPR 190
           T QMV+ P VPR
Sbjct: 181 TTQMVSRPGVPR 192


>Medtr7g112320.3 | DNA polymerase III, epsilon subunit-like protein
           | HC | chr7:46140775-46136943 | 20130731
          Length = 192

 Score =  241 bits (615), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 137/192 (71%), Gaps = 2/192 (1%)

Query: 1   MKTGSMIFSLLQLPRCRIHSLANYWGETXXX-XXXXXXXXXIRLLSSRINGLQEGHRKKW 59
           MKTGSMIFS LQ+PRCR+HSLAN  G+T             +RLL SRI GLQ GHRKKW
Sbjct: 1   MKTGSMIFSFLQVPRCRLHSLANNCGQTFHSFSNICENNSSVRLLGSRIYGLQGGHRKKW 60

Query: 60  TRRPITTNTEGKGGTKSRSTKHEIXXXXXXXXXXXXXNKTQLGEFQDIQYCDV-KEIAQK 118
           TRRPITTNTEG  GTKSRSTK EI              KTQLG+F +IQYCD+ +EIAQ 
Sbjct: 61  TRRPITTNTEGSAGTKSRSTKQEILSETISTSSTVNVKKTQLGQFPEIQYCDIHQEIAQN 120

Query: 119 KNLSSLVTVIAFDIETTGCGAKKHRSIEIALRDRQGGENSTFQTLVNPQRYVPNSDVHGI 178
           K+LSSLVTVI FDIETTG   +  R IEIALRD QGG NSTFQT VNPQR V NS +HGI
Sbjct: 121 KDLSSLVTVIVFDIETTGFSRENERIIEIALRDLQGGPNSTFQTFVNPQRSVYNSHIHGI 180

Query: 179 TNQMVNSPDVPR 190
           T QMV+ P VPR
Sbjct: 181 TTQMVSRPGVPR 192