Miyakogusa Predicted Gene

Lj1g3v4766270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4766270.1 tr|J9J073|J9J073_9SPIT RING/U-box protein
OS=Oxytricha trifallax PE=4 SV=1,34.55,1e-17,SUBFAMILY NOT NAMED,NULL;
SPLICING FACTOR, ARGININE/SERINE-RICH 2,RNAP C-TERM INTERACTING
PROTEIN,NU,CUFF.33218.1
         (857 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g112410.1 | poxvirus Ag35 surface protein | HC | chr7:4619...   765   0.0  
Medtr7g112410.2 | poxvirus Ag35 surface protein | HC | chr7:4619...   674   0.0  
Medtr4g110090.1 | PHD-finger protein, putative | HC | chr4:45846...   140   7e-33
Medtr8g099585.1 | RING/U-box protein | HC | chr8:42080666-420907...    76   1e-13
Medtr6g007650.1 | methyl-CpG-binding domain protein | HC | chr6:...    54   6e-07
Medtr3g464550.1 | PHD zinc finger protein | HC | chr3:25940691-2...    51   4e-06

>Medtr7g112410.1 | poxvirus Ag35 surface protein | HC |
           chr7:46190529-46186663 | 20130731
          Length = 904

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/618 (63%), Positives = 445/618 (72%), Gaps = 15/618 (2%)

Query: 247 VQDNDLDGLIDSGPAXXXXXXXXXXXXXXXLLIXXXXXXXXXXXXXXXYEFTISEEEREQ 306
           VQ +D D  +D+ PA               +++               YEFTISEEE+EQ
Sbjct: 295 VQCDDADDFLDNVPAIRTNSRKRSVLKRRRVILEDANSGSDCESRPSDYEFTISEEEKEQ 354

Query: 307 VREAKKXXXXXXXXXXXXXXXMENEEVGVYEDLNQQPKPPGRKGKEKSEEPQGRKGKEKV 366
           VREA +               MENE VG+YEDL+QQ KPP RKGKEK EE QGRKGKEKV
Sbjct: 355 VREAVQLCGNIRRNLRRASLRMENEVVGLYEDLHQQWKPPARKGKEKIEESQGRKGKEKV 414

Query: 367 GNSKSEVGKQVCGICLSEENKRRVRGVLDCCTHYFCFTCIMEWSKVETRCPLCKQRFKTI 426
            + KSEVGKQVCGICLSEENKRRVRGVL+ CTHYFCF CIMEWSKVE+RCPLCKQRF+TI
Sbjct: 415 EDLKSEVGKQVCGICLSEENKRRVRGVLNSCTHYFCFACIMEWSKVESRCPLCKQRFQTI 474

Query: 427 NKPTRSTAGLDLREVVIQVPERDQVYQPSEEELRSYIDPYETVLCSECHQGGDDGLMLLC 486
           +KP RST      E VIQVPERDQVYQP+EEELRSYIDPYE+V+CSECH GGDDGLMLLC
Sbjct: 475 SKPARSTTA---EEAVIQVPERDQVYQPTEEELRSYIDPYESVMCSECHLGGDDGLMLLC 531

Query: 487 DICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQIQERVADSRVSTQNPSVRSSP 546
           DICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQ QE  +D R +TQ+   R SP
Sbjct: 532 DICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQE--SDLRAATQSLPSRPSP 589

Query: 547 VLHSQESIDLNLTSSPGPXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXTLSERRWIHRQ 604
           V H +ESIDLNL SSP                                 TLSERRWIHRQ
Sbjct: 590 V-HIRESIDLNLMSSPHTSFSQGFGHLSSSRFSGRSTEGASPMSGGGAPTLSERRWIHRQ 648

Query: 605 IHQLL-----STDRMTSTTGRTNSISALSSTSNLQNTQIDQSREPTTQHTRTQDVGTSYH 659
           + QL      S DRM STTGRTN +SA  + SNL +++I+  REP++QH RTQDVGTSYH
Sbjct: 649 VQQLQIQQLRSIDRMASTTGRTNGVSATGTLSNLNSSEIN--REPSSQHIRTQDVGTSYH 706

Query: 660 TLVEERLRNDISPLMQNGDPFSTIVSNSRRPIIEDSTMLSNRPVNGVLWPGLLGTPTLSD 719
           T  EERL N+ISP MQNGDPFS  +SNSR P+++DSTM SN PVN  +WP +LGT TLSD
Sbjct: 707 TFFEERLGNNISPFMQNGDPFSIRMSNSRGPVVQDSTMFSNGPVNAAIWPEILGTSTLSD 766

Query: 720 HQPIHQFSSRPNSAIESSLSPAIKEESNFHIVKEQVRAMVKSHLQSLSRDIDLGHSTFKD 779
           + PIH  SSR N   E  +   +KEE N HIVKE++++MVKSHL+ LS+D DLG+STFKD
Sbjct: 767 YGPIHPCSSRSNIVTEVGIPATVKEEDNLHIVKERLQSMVKSHLKRLSQDADLGYSTFKD 826

Query: 780 IARSSTHTLLAACGLEHRKSEVCTVAPPPVCHHMEQIAGEQTSLIKDCCSSCFDRFVVDV 839
           IARSSTHT+LAACGLEH  SEVCTV PP VC H+E IAG Q S+IK CCSSCFD FV DV
Sbjct: 827 IARSSTHTILAACGLEHNTSEVCTVPPPSVCPHIELIAGGQMSMIKGCCSSCFDSFVGDV 886

Query: 840 VKKILDTTMSSQWLRLGL 857
           VK ILDT MSSQWLRLGL
Sbjct: 887 VKSILDTRMSSQWLRLGL 904


>Medtr7g112410.2 | poxvirus Ag35 surface protein | HC |
           chr7:46190529-46186663 | 20130731
          Length = 865

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/561 (62%), Positives = 399/561 (71%), Gaps = 15/561 (2%)

Query: 247 VQDNDLDGLIDSGPAXXXXXXXXXXXXXXXLLIXXXXXXXXXXXXXXXYEFTISEEEREQ 306
           VQ +D D  +D+ PA               +++               YEFTISEEE+EQ
Sbjct: 295 VQCDDADDFLDNVPAIRTNSRKRSVLKRRRVILEDANSGSDCESRPSDYEFTISEEEKEQ 354

Query: 307 VREAKKXXXXXXXXXXXXXXXMENEEVGVYEDLNQQPKPPGRKGKEKSEEPQGRKGKEKV 366
           VREA +               MENE VG+YEDL+QQ KPP RKGKEK EE QGRKGKEKV
Sbjct: 355 VREAVQLCGNIRRNLRRASLRMENEVVGLYEDLHQQWKPPARKGKEKIEESQGRKGKEKV 414

Query: 367 GNSKSEVGKQVCGICLSEENKRRVRGVLDCCTHYFCFTCIMEWSKVETRCPLCKQRFKTI 426
            + KSEVGKQVCGICLSEENKRRVRGVL+ CTHYFCF CIMEWSKVE+RCPLCKQRF+TI
Sbjct: 415 EDLKSEVGKQVCGICLSEENKRRVRGVLNSCTHYFCFACIMEWSKVESRCPLCKQRFQTI 474

Query: 427 NKPTRSTAGLDLREVVIQVPERDQVYQPSEEELRSYIDPYETVLCSECHQGGDDGLMLLC 486
           +KP RST      E VIQVPERDQVYQP+EEELRSYIDPYE+V+CSECH GGDDGLMLLC
Sbjct: 475 SKPARSTTA---EEAVIQVPERDQVYQPTEEELRSYIDPYESVMCSECHLGGDDGLMLLC 531

Query: 487 DICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQIQERVADSRVSTQNPSVRSSP 546
           DICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQ QE  +D R +TQ+   R SP
Sbjct: 532 DICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQE--SDLRAATQSLPSRPSP 589

Query: 547 VLHSQESIDLNLTSSPGPXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXTLSERRWIHRQ 604
           V H +ESIDLNL SSP                                 TLSERRWIHRQ
Sbjct: 590 V-HIRESIDLNLMSSPHTSFSQGFGHLSSSRFSGRSTEGASPMSGGGAPTLSERRWIHRQ 648

Query: 605 IHQLL-----STDRMTSTTGRTNSISALSSTSNLQNTQIDQSREPTTQHTRTQDVGTSYH 659
           + QL      S DRM STTGRTN +SA  + SNL +++I+  REP++QH RTQDVGTSYH
Sbjct: 649 VQQLQIQQLRSIDRMASTTGRTNGVSATGTLSNLNSSEIN--REPSSQHIRTQDVGTSYH 706

Query: 660 TLVEERLRNDISPLMQNGDPFSTIVSNSRRPIIEDSTMLSNRPVNGVLWPGLLGTPTLSD 719
           T  EERL N+ISP MQNGDPFS  +SNSR P+++DSTM SN PVN  +WP +LGT TLSD
Sbjct: 707 TFFEERLGNNISPFMQNGDPFSIRMSNSRGPVVQDSTMFSNGPVNAAIWPEILGTSTLSD 766

Query: 720 HQPIHQFSSRPNSAIESSLSPAIKEESNFHIVKEQVRAMVKSHLQSLSRDIDLGHSTFKD 779
           + PIH  SSR N   E  +   +KEE N HIVKE++++MVKSHL+ LS+D DLG+STFKD
Sbjct: 767 YGPIHPCSSRSNIVTEVGIPATVKEEDNLHIVKERLQSMVKSHLKRLSQDADLGYSTFKD 826

Query: 780 IARSSTHTLLAACGLEHRKSE 800
           IARSSTHT+LAACGLEH  SE
Sbjct: 827 IARSSTHTILAACGLEHNTSE 847


>Medtr4g110090.1 | PHD-finger protein, putative | HC |
           chr4:45846699-45843403 | 20130731
          Length = 614

 Score =  140 bits (352), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 95/169 (56%), Gaps = 12/169 (7%)

Query: 378 CGICLSEENKRRVRGVLDCCTHYFCFTCIMEWSKVETRCPLCKQRFKTINKPTRSTAGLD 437
           CGIC  E     V   +DCC+HYFCF CIMEW+K E+RCPLC+QRF  + +         
Sbjct: 34  CGICYIERGIS-VPAQIDCCSHYFCFVCIMEWAKHESRCPLCRQRFSNVRRLPMHDVFSS 92

Query: 438 LREVVIQVPERDQVYQPSEEELRSYIDPYETVLCSECHQGGDDGLMLLCDICDSPAHTYC 497
            R+V  ++P RDQVY P        +D      C  C    D+ L+L+CD+CD+ +HT+C
Sbjct: 93  SRDV--KIPIRDQVYHPHGNMTSGPVDSNAERKCCICDGAKDENLILICDLCDTVSHTFC 150

Query: 498 VGLGREVPEGNWYCDGCRPVALASLNSQIQERVADSRVSTQNPSVRSSP 546
           VGLG  VPEG+W+C  C  V+L        E  A   +  QN  ++++P
Sbjct: 151 VGLGYTVPEGDWFCHDC-AVSL--------ETNASYMLDQQNVELKAAP 190



 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 62/99 (62%), Gaps = 2/99 (2%)

Query: 747 NFHIVKEQVRAMVKSHLQSLSRDIDLGHSTFKDIARSSTHTLLAACGLEHRKSEVCTVAP 806
           N    K +++++VK +L  L+ +  LG  TFK +AR +THT+LAAC  E +KS +   + 
Sbjct: 513 NTEDAKTEIQSLVKLNLNCLAINKQLGVETFKVVARQATHTILAACHSEQQKSNI--YSS 570

Query: 807 PPVCHHMEQIAGEQTSLIKDCCSSCFDRFVVDVVKKILD 845
             VC H + I  ++++L+ +CC  CF  FV DVVK +L+
Sbjct: 571 NSVCSHTDHIQFQKSNLMPNCCRQCFHVFVNDVVKSMLE 609


>Medtr8g099585.1 | RING/U-box protein | HC | chr8:42080666-42090727
           | 20130731
          Length = 1270

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 70/164 (42%), Gaps = 19/164 (11%)

Query: 373 VGKQVCGICLSEENKRRVRGVLDCCTHYFCFTCIMEWSKVETRCPLCKQRFKTIN-KPTR 431
           V  + CGIC+   +    RGVLDCC H+FCF CI  W+ +   CPLC+  F+ I   P  
Sbjct: 29  VEGETCGICM---DMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVY 85

Query: 432 STAGLDLREVVIQVPERDQVYQPSEEELR--SYIDPYETVLCSE---CH-QGG------D 479
            T G +  E      + D         L   SY      V C +   C  + G      D
Sbjct: 86  DTIGSNKVEDGSFFRDDDWSIDGKNNNLSFPSYYIDENAVTCLDGDGCKIRNGFASVEED 145

Query: 480 DGL--MLLCDICDSPAHTYCVGLGRE-VPEGNWYCDGCRPVALA 520
            GL   + CD CD   H +CVG   E   E  W C  C   A++
Sbjct: 146 SGLDTSIACDSCDLWYHAFCVGFDTEGTSESTWLCPRCVADAVS 189


>Medtr6g007650.1 | methyl-CpG-binding domain protein | HC |
            chr6:1748720-1735614 | 20130731
          Length = 2161

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 465  PYETVLCSECHQGGDDGLMLLCDICDSPAHTYCVG--LGREVPEGNWYCDGC 514
            P++  +C  C    DD  +LLCD CD+  H YC+   L R +PEGNWYC  C
Sbjct: 1240 PWDEGVCKICGIDRDDDSVLLCDTCDAEYHKYCLNPPLAR-IPEGNWYCPSC 1290


>Medtr3g464550.1 | PHD zinc finger protein | HC |
           chr3:25940691-25947645 | 20130731
          Length = 1123

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 4/46 (8%)

Query: 470 LCSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCR 515
           +CS CH GG+   +LLCD C S  H  C+GL  ++P+G W+C  CR
Sbjct: 710 ICSVCHFGGE---LLLCDHCPSSYHKTCLGL-EDLPDGEWFCPSCR 751